Candidatus Promineifilum breve: CFX0092_A0161
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Entry
CFX0092_A0161 CDS
T05438
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pbf
Candidatus Promineifilum breve
Pathway
pbf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFX0092_A0161 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbf03019
]
CFX0092_A0161 (pnp)
03016 Transfer RNA biogenesis [BR:
pbf03016
]
CFX0092_A0161 (pnp)
Enzymes [BR:
pbf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CFX0092_A0161 (pnp)
Messenger RNA biogenesis [BR:
pbf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CFX0092_A0161 (pnp)
Transfer RNA biogenesis [BR:
pbf03016
]
Prokaryotic type
tRNA degradation factors
CFX0092_A0161 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
KH_KhpA-B
S1_RRP5
S1_2
Motif
Other DBs
NCBI-ProteinID:
CUS02042
UniProt:
A0A160SYK3
LinkDB
All DBs
Position
I:179131..181365
Genome browser
AA seq
744 aa
AA seq
DB search
MKSDTVFTTQVGRHALTIATGKLAEQAGGAVTLQVGESLLLATATMSKNVREGLDFFPLS
VDFEEKMYAAGRIPGGFFRREGKPTTEAVLTSRLTDRPLRPLFPDGMRNEVQVIVTTLSS
DSIHLLDIMSVNAASAALTISDVPWNGPIGAVRVGYIDGEFVADPTVLEMANSSLDLRLA
GTRDQIIMIEAAANEIPEEVMIDALAFGHQALQPIITLLEEMRAAVGKEKREPTMAVVDT
AVVDLAKSRIGNRVAEVIAATTEREDRNEALDVLRDEIVTGIVAENETADPKLVREVFAD
AIKKAVRRRILDEGIRPDGRDFSSLRELGAEVGISPRAHGSGLFQRGQTQVLSIVALGTP
REAQKLDGLSPEDSRRYMHHYNFPPFSTGETWPMRGPRRREIGHGALAENALLPMIPSEA
EFPYTIRVVSEVLSSNGSTSQASVCASSLALMDCGVPIKRPVAGISVGLISDEAKSVLLT
DIQGLEDHLGDMDFKVAGTTEGITAIQLDIKVQGLDLDILAQSLHQARGARMEILDAMLK
AIAAPRAELSLYAPRMLTIKIDPEKIGAVIGKGGATIRGLEEEFEVSVDVQEDGTIFVAG
VDGLKAEAALERIHMLTHDPDLGEIFTGRVVRITDFGAFVELAPGQDGMVHISQLASEHL
QRVEDAVQMGDEVMVMVTDVSGEGKIRLSRRAVLEGWTLEEARAQDAVRKGSGGPRGGNG
GRGGDRGGDRRGGGGDRGGRPQRR
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccgatacagtttttacaacccaggtgggacgccacgcgctgaccatcgccacc
ggcaagctggccgaacaggccggcggggccgtcacgttgcaagtgggcgaatccctgctg
ctcgccacggccaccatgtcgaagaacgtccgcgaagggctggacttcttcccgctcagt
gtcgactttgaagagaaaatgtacgccgccgggcgtatccccggtggctttttccgccgc
gagggtaagccaacgaccgaagccgtgctcacctcgcgcctgaccgaccggccgctgcgc
ccgctcttccccgacgggatgcgcaacgaagtgcaggtcatcgtgaccaccctctcgtcc
gacagcattcatctgctggacattatgtcggtcaacgccgccagcgccgccctgaccatc
tccgacgtgccctggaacgggccgatcggcgcggtgcgtgtcggctacatcgacggcgag
ttcgtcgccgacccgaccgtgctcgagatggcgaatagctcgctcgatctgcggctggcc
ggcacgcgcgaccagatcatcatgatcgaggccgccgccaatgaaatccccgaagaggtg
atgatcgacgcgctggccttcggccaccaggcgcttcaaccgattatcaccctgctcgaa
gaaatgcgcgccgccgtgggcaaggaaaagcgcgagccgactatggccgtcgtcgatacg
gccgtcgtcgaccttgccaagagccgcatcggcaatcgtgtagccgaggtcatcgccgcg
acgaccgaacgcgaagaccgcaacgaagccctcgatgtcttgcgcgatgagatcgtcacc
ggcatcgtggccgaaaacgagaccgccgaccccaaactggtgcgcgaggtcttcgccgac
gcgatcaagaaggccgtccgccgccgcatcctcgacgaaggcatccggcccgacggccgg
gacttctcctccctgcgcgagttaggcgccgaggtcggcatcagcccccgcgcccatggc
tccggcctgttccagcgcggtcagacccaggtgctgtctatcgtcgccctgggaaccccc
cgcgaagcgcagaagctcgacggcctgtcgcccgaggacagccgccgctacatgcaccac
tacaacttcccgcccttctctaccggcgagacgtggcccatgcgcggcccgcgccggcgc
gagatcggtcacggcgcattggccgagaacgccctgctgccgatgatcccgtccgaggcg
gaattcccctacaccatccgcgtcgtgtccgaagtgttgtcgtccaacggcagcaccagc
caggccagcgtctgcgcctccagtctggcgctgatggattgcggcgtgccgatcaagcgc
cccgtggccggtatctcggtcggcctcatctccgacgaggcgaagtccgtcctcctgacc
gacattcaagggcttgaggatcatctgggcgacatggacttcaaggtcgccggcaccacc
gaaggcatcaccgccatccagttggacatcaaggttcaaggtctcgatctggacatcctg
gcccaatcgctgcatcaggctcgtggcgcccggatggagattctggacgccatgctcaag
gccatcgccgcgccgcgcgcggagttgagcctctacgcgccgcgtatgctgacgatcaag
atcgatcccgaaaagatcggcgcggtcatcggcaagggcggggcgaccatccgcggcctg
gaagaggaattcgaggtatcggttgacgtgcaggaagacggcacgatcttcgtcgccggc
gtcgatgggctgaaggccgaggccgcgctggaacgcatccacatgctgacccacgacccc
gacctgggcgaaatcttcaccggccgggtcgtgcgcatcaccgacttcggcgcgtttgtc
gaactggcccccggtcaggacggcatggtccacatctcccaattggcctcggagcatttg
cagcgcgtcgaggacgcggtgcagatgggcgacgaggtcatggtcatggtgaccgacgtc
agcggcgagggcaagattcgcctgtcgcggcgggccgtgctggagggctggaccttggaa
gaggcccgcgcccaggacgccgtgcgcaagggcagcggcggcccgcgcggcggcaacggt
ggccggggtggcgaccgcggcggcgaccgtcgcggcggcggcggcgaccgtggtggccgt
ccgcagcgccgttaa
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integrated database retrieval system
