Prionailurus bengalensis (leopard cat): 122471643
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Entry
122471643 CDS
T07574
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pbg
Prionailurus bengalensis (leopard cat)
Pathway
pbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122471643 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbg03019
]
122471643 (PARN)
Enzymes [BR:
pbg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122471643 (PARN)
Messenger RNA biogenesis [BR:
pbg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122471643 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
122471643
NCBI-ProteinID:
XP_043416426
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All DBs
Position
E3:29550947..29719241
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AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLQKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNASKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTATEQLHEAGYDAYITGLCFLSMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYADYVGKKHEEKQIKRKWTEDSWKEVERKRLN
TQCISYALQNHYHHANSLTSTSTVGKRNLSPSPAEADLETRISGEISDTELEQTESCAES
LSEGRKKAKKLKRMKKELSPAGGLPGSPAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcaaaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
actgcattaacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaaacat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacgaagtcatttaacttctatgttttcccgaaacccttcaatagatcc
tcgccagatgtcaagtttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaatggaattccctatttaaatcaggaagaagaaaga
cagttaagggagcagtatgatgaaaaacgcctacagtccaatggtgcaggaactctgtct
tacgtatctcccaacgcgtcaaaatgtcctgtgacgattcctgaggatcagaagaagttt
attgaccaagtggtagagaaaattgaagatttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcacgttgagactttagaaactgaaaagaaggagcgatacatcgtc
atcagcaaagtagatgaagaggaacgtaaaaggagggagcagcagaaacacgctaaagaa
caggaagaactgaatgacgctgtgggattttctagagttattcatgccattgccaattcg
ggaaaactcgtcattggacacaatatgctcttggatgtcatgcacacggttcatcaattc
tactgccctctgcctgcggacttaaatgagtttaaggagatgacaacatgtgttttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaataac
acatctcttgcagaactggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttacgacacagctactgagcaactccacgaggcaggc
tatgacgcttatatcacagggctgtgcttcctctccatggcgaactacctaggttctttt
cttagccctccaaaaattcacgtgtctgccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctcaacttggaaggaccagacttg
caaccaaaacgcgatcatgttctccatgtgacattccccaaagaatggaaaaccagcgac
ctttaccagctttttagtgcctttggtaacattcagatatcctggattgatgacacatca
gcgtttgtctctctcagccagcccgaacaagtacagattgccgtcaataccagcaaatac
gcggaaagctatcggatccagacctatgctgactatgtgggaaaaaaacacgaggagaag
cagatcaagagaaagtggacagaagatagttggaaggaggttgagagaaagcggttaaac
actcagtgcatatcctatgctctgcagaatcactatcaccacgccaatagtcttacctcg
accagcacggtaggaaagagaaatctgagccccagcccagcagaagctgacttggagacc
agaatatcaggggagatttctgacactgagctggagcagacagagtcctgtgcagaatcc
ctctctgagggaaggaaaaaggccaagaaattaaaaaggatgaagaaggagctttcgcca
gcaggaggcctcccgggcagccctgccaagctcttcgaggttcccgacacgtggtaa
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