Prionailurus bengalensis (leopard cat): 122475051
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Entry
122475051 CDS
T07574
Symbol
SHOC1
Name
(RefSeq) LOW QUALITY PROTEIN: protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
pbg
Prionailurus bengalensis (leopard cat)
Brite
KEGG Orthology (KO) [BR:
pbg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pbg03036
]
122475051 (SHOC1)
Chromosome and associated proteins [BR:
pbg03036
]
Eukaryotic type
Meiosis-specific proteins
Others
122475051 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
122475051
NCBI-ProteinID:
XP_043422622
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All DBs
Position
D4:complement(72153012..72236597)
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AA seq
1501 aa
AA seq
DB search
MFSTFKYCAIDYLYENIVRKKFCRDALLLRVPSCLYQDGNYYAGVIDNKYRRPWMRASAV
SVPGVTDLSVLDQWKASLFVEDFLEKKTITGMVTQINCEFEEVVPSSNPNSQSEVEETSL
YTHEDYTEVFTLVSGLEKYPALQAQNEDFSIDEEIIFVNSVMSYKSQLPTLHTLLSRLKL
YLINDPILDFKGQIFTEANFFRESFSFQGDLKNFVKEDFYMDKENFCQEKLEDTPSILLE
CEFLIPTSLKQEVDIPSLTKLKESLNLMPEIINYVDENEKLFKRDLTTKHGIGIEDIKCS
STEILAIQSYGEPEYNQPVELEMPLTHLCQTNQHSSMTSLTGLQTFPFSPSEKISLLTAE
ESATKYHMVWQLESSLKPFLLTVPRAEEPNSQYSVTDLKKIFSIEEESLVVDPVNPEWWE
KEGLNLMETETLEHLNTYLCHDDLSADDTKMEIFLPTKILQFESWLEYKSCSSPIALINE
KSTNDRLLLPQKISSLAKEIPDLCFSDDYISVKRPTKEEKPKNDLELVYRISQNKENEDY
LELNCTVPSIESSSSPKIEKSSFKQGRKWKNDLDLLNDFIVLRNKHRTCTSKTELTGSKE
NDEFQDKEEHSLTLQEESPIVCTNKVIEKISQERKVDKVIEIQASDSQCQAFCLLEAAAT
PILKKLVCLCTLPAANWTFATVIFDETRFLLKEQEKVISDAIQQGMNDEREMTYKHAALL
HLLVTIRDVLLTCCLDTALGYLSNAKDIYRSILGSYLDNIWRQLEIVQFVREKKPETNYK
IQELRCQILNWMQSEQQINVLIIIRMDSDGEKHLLIKILNKMEGLTLTVLQNKRNDFLES
EGVLNGTSSCVVAHNQYIGADFPWSNFSFVVEYNFVENSCWTKHCEKLNIPHMAFKVILP
DTVLKRRNLLDSFGGFLLEIQVPYVXFASEGLLNTPEILQLLESNYNITLVERSCSESLK
LFGSTECYVVVTVDEHTAIVLQDLKELNCEKASDNIIMRLMALSFQYSYCWIILYTKKTL
NSEYHLTEKALHHLALIYAALVSFGLKSEELDVKLVLAPGVEEAALIVRQIADHSLMTSK
RDPYEWLDKSWLEVSPSKEEMYLLDFPCINPLVAQLMLNKGPSLHWILLATLCQLQELLP
EVPGKVLKHFCSITSLFKISSSSITKSPQIPSPRENRNQASTITSQSSASGSSNSVFQEY
NEYQKSDIGATVHKDTNITSNYNSSLTQLREMPCILSPVTSYNQASYQKDSSCNPNIVHN
PFLINIGSRNMAGNSFQNWNDSESDVFSLDLTQMNCENIISPIDTQKRVAPNFINNQKKG
THVAKGPINKEVCTPNFSLEGSQSPLPWNFKKNVWEQQNHSFNLEYGEKQTTCDKWYSQK
DNLFTTQQKCLSDEVESFLHQSSNAGTKKTFWRELPSVPSMDLFCTSDPNVNQKEFSSLY
FHQRAGKCLGQKRHSESSSNSGDKKSLPDLMCSQLPQFKKRRLVYEKVPGRVDGQTRLRF
F
NT seq
4505 nt
NT seq
+upstream
nt +downstream
nt
atgttttcaacattcaaatattgtgcaatagactatttatatgagaatatagttagaaag
aagttttgcagagatgctttgttgcttcgagtcccttcatgtttatatcaagatggaaat
tattatgcaggagttattgataataagtataggaggccatggatgagagcttcagctgtt
tcagtgccgggagtgacagatctctcagtcttggatcaatggaaagcaagtctctttgtg
gaggattttcttgagaaaaaaacaatcacaggaatggtgacccagattaactgtgaattt
gaggaagttgttccaagttcaaacccaaactcccaaagtgaagtagaggaaaccagttta
tacacccatgaggactacactgaagtctttacacttgtcagcggtttagaaaaatatcca
gcacttcaagcacagaatgaagatttttctattgatgaagaaataatttttgtaaatagc
gtgatgtcctataaaagtcagctaccaactttgcatactctgttgagtaggctaaaacta
tatttgataaatgaccccattttagatttcaaaggacagatcttcacagaagctaatttc
ttcagggaatctttctcttttcaaggagatttgaaaaattttgtgaaagaagatttttac
atggataaagaaaacttttgtcaggaaaaactagaagatacaccatcaattttgctcgag
tgtgaattcttaatacctacaagcctcaaacaagaagttgatattccatcactcaccaaa
ctaaaggaatcgttaaacttaatgccagaaataataaattatgtagatgaaaatgaaaag
cttttcaaaagagatcttactaccaagcatggaattggcattgaggatataaaatgtagc
tccacagagattttggccattcaaagctatggtgaaccggagtacaatcaaccagtcgag
ttagaaatgccactaactcatctatgtcaaacaaaccaacattcttccatgacttcatta
acaggacttcagacatttccattttctcctagtgaaaaaattagtttgcttactgctgaa
gaatcggctaccaaataccatatggtgtggcagttagaaagctctttgaaaccatttttg
cttacagtgccaagagctgaagagcccaatagtcaatattcagttacagatttgaaaaag
atattttctattgaagaagaaagccttgtagttgatcctgtaaacccagagtggtgggaa
aaagaaggactaaatctaatggagacagaaactttggaacatctgaatacatatttgtgt
catgatgatctatctgctgatgatactaaaatggagatatttttgcctacaaaaatactt
caatttgagtcatggctagaatataaaagttgttcctcacctattgcacttattaatgag
aaatctacaaatgatcgtttattgctcccacaaaagatttcatctctggcaaaagaaata
ccagacctgtgtttttctgatgactatatatctgttaaaagaccaacaaaagaagaaaaa
ccaaagaatgatctagaattagtttatagaataagccaaaataaagaaaatgaagattac
ttggaacttaactgcacagtaccatctattgaatcatcttcctctccaaaaattgaaaaa
tcatcttttaaacagggtagaaaatggaagaatgatttggaccttttgaatgactttatt
gtactgcgaaataaacatagaacttgcacctcaaagactgaactcacgggcagtaaagaa
aatgatgaatttcaagataaagaagaacattccttgactcttcaagaagaaagtcccatt
gtttgtactaataaagtcatagagaaaataagtcaggaaaggaaagtagacaaggtcatt
gaaattcaagcatcagatagccagtgccaagcattctgtctcctagaagcagcagctact
cctatcttaaaaaaacttgtatgcctctgtactctccctgctgctaattggacatttgcc
actgtcatttttgatgaaacaagattcctcttaaaggaacaagaaaaagtaataagtgat
gctattcagcaaggtatgaatgatgaaagagaaatgacatacaagcatgctgctctctta
catcttctggtaacaattagagatgtccttttaacatgctgcttggacacagcattggga
tatttgtcaaatgcaaaagatatctacagaagcatcttaggctcctatctggacaacatt
tggagacagctggagattgtacagtttgttagggaaaaaaagcctgaaaccaattacaag
atacaagaactgcgatgccagatactaaattggatgcagagtgaacagcagattaatgtg
ctgattataataagaatggactcagatggtgagaaacatttactcattaaaatccttaac
aaaatggaaggtttaacactgactgtcttacaaaacaaaagaaatgattttctggaatct
gaaggtgttttaaatggtacaagttcctgtgtagttgcacataatcaatatattggagca
gatttcccctggagtaacttctcatttgtggtggaatacaattttgtagaaaactcttgt
tggactaaacactgcgagaaattgaatattcctcacatggcctttaaagtgattcttcca
gacacagtattaaagagaagaaacttgctggatagttttgggggctttcttttggaaatt
caggttccatatgtgtttttgcatctgaaggacttcttaatactccagaaattcttcagt
tgctagaatccaactataatatcacactagtggagagaagctgcagtgagtcactgaaac
tctttggaagtacagagtgttatgtagtggtgacagttgatgaacacaccgccatagttt
tgcaggacctaaaagaattgaattgtgagaaggcatcggacaatatcattatgagactga
tggcattatcattccagtacagctattgttggataattttatataccaaaaaaacattaa
actcagagtaccatcttacagaaaaggcacttcatcatctagcactgatttatgcagctt
tggtttcatttgggctaaaatcagaagaactggatgtaaagcttgtacttgccccaggag
tggaagaggctgcactgatagttcgacaaattgctgatcacagtttaatgacctcgaaga
gagatccttatgaatggttggataaatcctggcttgaagtttcaccatctaaggaagaaa
tgtacttacttgactttccatgtattaacccattggtggctcagctcatgttaaataaag
gaccatcactgcactggatattattagcaactctttgtcagcttcaggaacttttacctg
aagttccaggaaaagtcttaaagcatttttgtagcatcacttccttattcaagattagtt
cttcttccataacaaaatcacctcaaattccatcacctcgggaaaacaggaatcaggcta
gtaccattacctcccagagttcagcttctggctcttcaaactctgtctttcaagaatata
atgaataccagaaatcagacataggagccacagtgcacaaagacacaaacatcacttcaa
actataactcttcccttacgcaactcagagaaatgccatgcattttatcacctgtgactt
cttataatcaggccagctaccagaaagactccagttgtaatcctaatatagtacataatc
ctttcctaattaatataggatcaaggaacatggctggtaactcctttcaaaactggaatg
attcagagtcagatgttttttctttggatctaacacaaatgaactgtgaaaatataatat
caccaattgacactcagaagagagttgcccctaattttataaataatcagaaaaagggaa
cacatgttgcaaaaggacctataaataaagaagtatgtacccctaacttttcactggaag
gctctcaatctcctcttccctggaacttcaagaagaatgtatgggaacaacagaatcact
cattcaacttagaatatggtgaaaagcagactacatgtgacaaatggtactctcagaaag
ataatctattcactactcagcagaaatgtctttcggatgaggtagaaagcttccttcatc
aaagttcaaatgctgggactaaaaagactttctggagagaattaccatctgtccccagta
tggatttattttgcacttctgatcctaatgtaaatcaaaaagaattcagcagtctttatt
tccaccaaagagctgggaaatgtttaggacagaaaaggcactctgaatcttcatctaact
caggagacaaaaaatcattaccagatctcatgtgttcacaactaccacaattcaaaaaac
gacgtctagtgtatgaaaaagtccctggtagagttgatggacaaactcgtctgaggtttt
tttga
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