Prionailurus bengalensis (leopard cat): 122485766
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Entry
122485766 CDS
T07574
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pbg
Prionailurus bengalensis (leopard cat)
Pathway
pbg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122485766 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbg03041
]
122485766 (DDX42)
Enzymes [BR:
pbg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122485766 (DDX42)
Spliceosome [BR:
pbg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122485766 (DDX42)
Complex B
122485766 (DDX42)
Complex C
U2 SnRNP specific factors
122485766 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
122485766
NCBI-ProteinID:
XP_043440903
LinkDB
All DBs
Position
E1:45855883..45896545
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AA seq
934 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPPDSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPIASAAKGIPGFGNTGNVSSAPVTY
PSAGAQGVNNTASGNNSREGPGGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGGR
HGDGYRYPESGSRHADGHRHGENRHGGGGGRHGESRGANDGRNGESRKEGCNRESKVDPK
VDSKMDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggtccaggcaccaagaggggatttggctttgggggttttgcc
atcagtgctggaaagaaggaggaacccaaactcccacaacagtcccacagtgcctttggg
gcaaccagctcttcttccggatttggaaagtcagctccaccacagctcccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcatattttgaagatgaggaa
gaagactctagcaatgttgatttgccttatattcctgctgaaaactcacctacccgccag
cagttccattccaagccaccagattctgacagcgatgatgatcccttggaggcattcatg
gctgaagtggaggatcaggcggctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggcagagaacccaactgctggtgtggttcaggaggaagaagaagataat
ttggaatatgatagtgatggaaatccaattgcaccttccaagaaaatcattgatcctctt
cctcccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgag
catgaagagataaccaacctcacccctcagcagctaatagatctccgtcataagctcaat
cttcgggtctctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacag
tgccagggcgtgcctgtggcgttaagtggtagagacatgattggtattgccaaaacaggc
agtggaaaaacggccgcctttatctggccgatgttgattcatataatggaccagaaggaa
ctggaaccaggtgatggaccgattgcagtgatcgtgtgtcctactagggagctttgccag
cagatccatgcagaatgtaagcggtttgggaaagcgtataatcttcgatcagtggctgtg
tatggaggagggagcatgtgggagcaagccaaggctcttcaggaaggggcagagattgtt
gtgtgtaccccaggtcgactgattgatcatgtgaagaagaaagctaccaatcttcaaagg
gtctcttaccttgtgtttgatgaagcagatcgcatgtttgacatgggatttgagtaccag
gtgcgatccatagcaagtcatgtccgtcctgacagacagaccctcttattcagtgcaact
tttcggaaaaagattgaaaaactggccagagacatcctgatcgaccctattcgtgtggtg
cagggagacattggcgaggcaaatgaagatgtgacacagattgtggagattcttcactct
gggcctagtaaatggaactggcttacccgtcgtctggtggaatttacctcttcaggaagt
gtcctcctgtttgttactaaaaaagccaatgctgaagagttagccaataaccttaagcag
gagggtcataatcttgggctgcttcatggggacatggatcagagtgaaagaaacaaagtc
atttcagactttaagaaaaaggacatcccagtcctggtggccacagatgttgcagcccgt
ggtctggatattccttcaattaagaccgtcattaactatgatgtggcacgagacattgat
actcatactcacaggattggccgcacaggacgagcgggtgagaagggcgtggcatatacc
ttgctgacccccaaggacagcaattttgctggtgaccttgtccggaacttggaaggagcc
aatcaacatgtttccaaggaactcctagatctagcaatgcagaatgcctggtttcggaaa
tcccgctttaaaggaggcaaaggcaaaaagctgaacattggtggaggtggcctaggctac
agggagcggcctggcctaggctcagagaacacggaccgaggaaataacaacaatgtaatg
agcaattatgaggcctacaagccctccacaggagccatgggagatcggctgacggccatg
aaagcagctttccagtcacagtacaagagtcactttgttgctgccagcttaagcaaccag
aaggcaggaagctctgctgctggggcaagtggatggactagtgcagggagcttgaattct
gttccaaccaattcagcccaacagggccataacagtccagacagccccatcgccagcgcc
gccaagggcatcccaggctttggcaacaccgggaacgtcagcagtgctccagtgacctac
ccttccgctggagcccagggagtcaacaacacagcttcagggaataacagccgagaaggg
cctgggggaggcaacgggaagagagagcgatatactgaaaatcggggtggcagccgccac
agtcacggagagagtggcaatcggcatggcgacagcccacgtcacggagatggtggtcgc
catggagatggataccgctacccagaaagcggcagccgtcatgctgatggtcaccgtcac
ggggagaacagacatggaggaggtggaggccgacatggagagagccgaggcgcaaacgat
ggtcggaatggtgaaagcaggaaagaaggttgcaatcgtgagagcaaggtggaccccaag
gtggacagcaagatggacaagatggacagcaagacagataagacagctgacggttttgct
gtccccgagccacccaagcgcaagaaaagtcgatgggacagttag
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