Prionailurus bengalensis (leopard cat): 122491908
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Entry
122491908 CDS
T07574
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pbg
Prionailurus bengalensis (leopard cat)
Pathway
pbg03008
Ribosome biogenesis in eukaryotes
pbg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122491908 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
122491908 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbg03019
]
122491908 (XRN1)
03009 Ribosome biogenesis [BR:
pbg03009
]
122491908 (XRN1)
03016 Transfer RNA biogenesis [BR:
pbg03016
]
122491908 (XRN1)
03036 Chromosome and associated proteins [BR:
pbg03036
]
122491908 (XRN1)
Messenger RNA biogenesis [BR:
pbg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122491908 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
122491908 (XRN1)
Ribosome biogenesis [BR:
pbg03009
]
Eukaryotic type
Pre-60S particles
RNases
122491908 (XRN1)
Transfer RNA biogenesis [BR:
pbg03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
122491908 (XRN1)
Chromosome and associated proteins [BR:
pbg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122491908 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
122491908
NCBI-ProteinID:
XP_043451163
LinkDB
All DBs
Position
C2:122115813..122236480
Genome browser
AA seq
1745 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINENGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNYKEKKKSKGQEGSSICWAALDKNGEEVVTSKDNLEDE
TEDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSW
YYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPMCYQHLMTSEDS
PIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECL
MCWYDRDTEFTYPSPWPEKFPAIERCCTRYKIISLDAWRVDISKNKITRVDQKALYFCGF
PTLKHIKHKFFLKKNGVQVFQQSSRGENMMLEILLSAESDELSIENIASSVLGKSVFVNW
PHLEEARVVGVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQSNWTKEVQGISE
YYLRRKGIIINETSAVVYVQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAF
DSRFSSIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVVFSIPCEPNLDA
LIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKF
NKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGE
NENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVT
VKPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVL
FEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVNHYS
SNSSISSGHLGGLNHSPQSLFVPTQVPNKNDDEFCNIWQSLQGSGKVQHFQPTPQEKIAV
LPQEISQVTQHHKAAFTDNTVKCQQRKHEPHKKFKEECKSPKTESRSQKMSNKQTFGGPA
KCNIKLLKRNESAEVSENQKVLTGYPNAVDKPNPGIENFLASLNISKENEVQSSHHEEPP
SEELLSPQSFAMKGTRMLKEILKIDASDTVDHKNEMKQFGNEATVSSNRRDEYGPSSQPQ
QNKKLTSYMNKPHSTSEYHNVQPMDHVCWPAPSHIPPVSTPVTELSRICSLIGMPQPDFS
FLRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFALQQLGSLGVNFPFPPPIFPN
YPPAVPPGTIPPVFPQPTGWDHYGSNLALGAANIMPSSSHLFGSMPWGPPVPVPGKPFHH
ASYSGTMPMAGGMPSGVHNQFIPLQVTKKRVANKKNFESKEAQSAPATPLQTSQPTSSSV
TKVIPQETSSASLKSSQITQPASSFQVEGASQGHSMSHHKSTPSSSSRRKSRKLAVNFGV
PKPSE
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcggtatccctgcctcagtgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctggacatgaatggaatcata
catcaatgttcccatcctaatgatgatgatgttcacttcagaatttcagacgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgcatcattaaacctaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaagatgaaccagcagcgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaataaagaaggcattagaaaaaggagaa
actcttcctacagaggccagatttgattccaactgtattacaccagggactgaattcatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttctacagataaatcg
tggcaaggagttaccatctacttctcaggccatgagactcccggagaaggagaacataaa
atcatggaatttatcagatctgagaaagcaaagccagatcatgatccaaacaccagacat
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttctctcttttaagagaagaggttcggtttggtggcaaaaagacacaaagggtatgcgca
ccagaagaaaccacatttcacctcctacacttatctttaatgagagagtatattgactat
gagttttcagtattgaaagacaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatcccccatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttggtggttatattaatgaaaatggccatctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgggaacacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcgggtgtcgcagcagaagaa
gccaagaactacaaggaaaagaaaaaatcaaagggccaggaaggctcctccatatgttgg
gctgctttagacaaaaatggagaagaagtggtaacttctaaagataatttagaagatgag
actgaagatgatgacctatttgaaactgagtttagacaatataaaagaacatattacatg
acgaagatgggagttgatgtagtatctgatgacttcctggctgatcaagctgcatgttat
gttcaggcaatacagtggattttgcactattactatcatggagttcagtcctggagctgg
tattatccctaccattatgcacctttcctatctgatatccgcaacatcagcacactcaaa
atccattttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtacttcca
gcagctagcaaaaatttacttcctatgtgctaccagcacttgatgaccagtgaagactca
ccaattatagaatattatccgcctgattttaaaactgacctaaatgggaaacaacaggaa
tgggaagctgtggtcctaatcccttttattgatgagaagcgattgttggaagccatggaa
acatgtaatcactccctcaaaaaggaagagagaaaaagaaaccaacatagtgagtgccta
atgtgctggtatgatagagacacagagttcacctacccctcaccatggccagaaaagttc
cctgccatagaacgttgttgcacaaggtataaaataatatcattagatgcttggcgtgta
gacataagcaagaacaaaataaccagggttgaccagaaggcattatatttctgtggattt
cctactctgaaacacatcaaacacaaattttttttgaagaaaaatggggttcaagtattc
caacaaagtagtcgtggagaaaacatgatgttagaaatcttactgagtgcagaatcagat
gaacttagtatagaaaatatagcttcttcagtgcttggaaaatctgtctttgttaattgg
cctcatcttgaagaagctagagttgttggtgtatcagacggagaaactaaattttacttg
gaagaacctccaggaacacagaagctttatttaggaagaactgccccaccatctaaagtg
gtccatcttggagacaaagaacaatctaactggacaaaagaagtacaaggaatttcagaa
tactacctgagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgttcag
ttactcacaggtcgtaaataccaaataaatcaaaatggtgaagttcgtcttgagaaacag
tggtcaaaacaagttcttccttttgtttatcaaactattgtcaaggacatccgagctttt
gactcccgtttctccagtatcaaaacattggatgacttgtttcctcttagaagtatggtc
tttatgctgggaaccccctattatggctgcactggagaagttcaggattcgggagatgtg
attacagaaggtaggattcgtgtggttttcagcattccatgtgaacccaatcttgatgct
ttaatacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagt
cgtcttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaaga
ggatctaggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattc
aacaaaaaaaatgaggaggtacctggatacactaagaaagttggaagtgaatggatgtat
tcatctgcagcagaacaacttcttgcagagtacttagagagagctccagaactatttagc
tatatagccaaaaacagccaagaggatgtgttctatgaagatgatatttggcctggagaa
aatgagaatggtgctgagaaagttcaagaaattattacttggctaaagggacatcctgtc
agtactctgtctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaa
attgaggaagaagttgaaaagtgcaagcaaagaaagaataataagaaggtacgagtgacc
gtgaagccccatttgctgtacagacctttagaacagcaacatggagtcattcctgatcga
gatgcagaatttcgtctttttgaccgtgtggtaaatgtgagagagaacttttcagttcca
gttggccttcggggcaccatcataggaattaaaggggctaacagagaagctgatgtacta
tttgaagtattatttgatgaagaatttcccggaggcttaacaataaggtgctcacctggt
agaggttatcgactgccaacaagtgccttggtgaatctttctcatgggagtcgctctgaa
actggaaatcagaagttgacagccattgtgaaaccacagccagctgtgaatcactatagc
tcaaattcatcaatttcctctgggcatttgggaggcctgaaccattccccgcaatcactt
tttgttcctactcaagtacctaataaaaatgatgatgaattttgcaacatttggcagtcc
ttacagggatctggaaaggttcagcactttcagccaactccacaagagaagattgcagtt
ctacctcaagaaataagtcaagtaactcaacatcataaagccgcctttactgacaacact
gttaaatgtcagcaaagaaaacatgagcctcacaaaaaatttaaagaagagtgtaagagt
cctaaaactgagagccggtcacaaaaaatgtcaaataagcagacatttggagggcctgcc
aaatgtaatattaagctattgaagagaaatgaaagtgcagaagtctcagaaaaccagaag
gttctgactggttacccaaatgctgttgataagcctaaccctggaattgagaacttttta
gcatccttgaatatctccaaagaaaatgaagtacagtcatctcatcatgaagagcctcca
agtgaagaacttttgtcaccacagtcatttgctatgaaaggaactcggatgcttaaagaa
atactaaaaattgatgcctctgatactgtggaccataagaacgaaatgaagcagtttggt
aatgaagccactgtttcctctaatagaagagatgaatatggaccttcctcacagcctcaa
cagaataagaaattaacatcttacatgaataagcctcacagtactagcgaataccacaat
gttcagcctatggaccatgtgtgttggcctgctcccagccatatccctcctgtgtccaca
ccagtaactgaactttctcgaatttgttcccttattggaatgccacaaccagatttctcc
tttcttagaacaccacagacgatgacagtttgccaggtaaaattatctaatggcttactg
gtacatgggccacagtgccattctgaaaatgaagccaaggaaaaagctgcactttttgca
ttacaacagttgggctccttaggagtgaatttcccttttcctccaccaatatttccaaat
tatcctcctgctgtaccacccggaaccattcctccagtttttcctcaacctactggctgg
gatcactatggaagcaacttagcactgggggcagctaatataatgccttcatcatctcac
ctctttggctcaatgccatggggaccaccagtgccagttcctgggaagccttttcatcat
gcttcatattctgggaccatgcccatggctgggggaatgcccagtggtgtgcacaatcag
ttcatacctctacaggttactaagaaaagggttgcaaacaaaaagaactttgagagtaag
gaggcccagagtgctccagctaccccacttcagactagccagccaacatcttccagtgtc
accaaagtgattccacaggagacttcatcagcttccttaaagtcctctcaaattactcaa
cctgcttcttcttttcaagttgaaggcgcctcccaaggccacagtatgtctcaccacaag
tcaacaccaagctcttcttcaagaagaaaatcaagaaaactggctgtcaattttggtgtt
cctaaaccttctgaataa
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integrated database retrieval system
