Caldimonas brevitalea: AAW51_0249
Help
Entry
AAW51_0249 CDS
T04216
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pbh
Caldimonas brevitalea
Brite
KEGG Orthology (KO) [BR:
pbh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbh03016
]
AAW51_0249
Enzymes [BR:
pbh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AAW51_0249
Transfer RNA biogenesis [BR:
pbh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AAW51_0249
Prokaryotic type
tRNA splicing ligases
AAW51_0249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6511
Motif
Other DBs
NCBI-ProteinID:
AKJ26940
UniProt:
A0A0G3BK63
LinkDB
All DBs
Position
283521..284741
Genome browser
AA seq
406 aa
AA seq
DB search
MKEQNYNVEEVPGGVPVKMWTQGVPVEDEAKRQLANAARLPVVFKHIAAMPDVHLGIGAT
VGSVIPTIKAIIPAAVGVDIGCGMIAAKTTLSAADLPDNLEPLRSAIERAVPHGRAPGSR
DPGAWHKVPGAVDTAWAQLEPEFTELCRDYPKLEKTNHRNHLGTLGTGNHFIEVCLDEQG
FVWFMLHSGSRGVGNAIGTMFIELAKQDAMRQQANLPDRDLAYFEEGSRYFGDYVRAVSW
AQKFAQLNREVMMRRVIEAAKTVIRKNFQSHVEAVNCHHNYVQQERHFGEDVYVTRKGAV
SAKKGELGIIPGSMGARSYIVRGKGNPESFESCSHGAGRTMSRAEAKRRFTLADHRAATE
GVECRKDRDVIDEIPMAYKDIDAVMEAQRDLVDVVHTLKQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacagaactacaacgtcgaagaagtgccgggcggtgtgccggtgaagatgtgg
acccagggggtgcccgtcgaggacgaagccaagcgtcagctcgccaatgcggcgcgtttg
ccggtggtgttcaagcacatcgcggccatgcccgacgtccacctcggcatcggcgcgacg
gtcggctcggtgatcccgaccatcaaggcgatcatcccggccgccgtcggcgtcgacatc
ggctgcggcatgatcgccgcgaagaccaccttgtcggcggccgacctgcccgacaacctc
gagccgttgcgctcggcgatcgagcgggcggtgccgcacggacgtgccccggggtcgcgc
gacccgggcgcctggcacaaggtgccgggcgcggtcgacaccgcgtgggcccagctggag
cccgagttcaccgagctgtgccgcgactaccccaagctggagaagaccaaccaccggaac
cacctcggtacgctgggcaccggcaaccacttcatcgaggtctgcttggacgagcaaggt
ttcgtctggttcatgctgcactccggctcgcggggcgtgggcaatgcgatcggcaccatg
ttcatcgagctggccaagcaggacgcgatgcgccagcaggccaacctgcccgaccgcgac
ctggcctatttcgaagaaggctcgcgctatttcggcgactacgtgcgcgccgtcagctgg
gcgcagaagttcgcgcagctgaaccgcgaggtgatgatgcgccgggtcatcgaggcggcc
aaaaccgtgatccgcaagaacttccaaagccatgtcgaagcggtgaactgccaccacaac
tacgtgcagcaggagcgccacttcggcgaagacgtctatgtcacccgcaagggtgcggtg
agcgccaagaagggcgagctgggcatcatcccgggcagcatgggcgcacgcagctacatc
gtgcgcggcaagggcaacccggagagcttcgaaagctgttcgcacggggccggccgcacg
atgagccgggccgaggccaagcgccgcttcacgctggccgaccatcgcgcggcgaccgag
ggtgtggagtgccgcaaggaccgcgatgtgatcgacgagatcccgatggcctacaaggac
atcgacgcggtgatggaggcgcagcgcgacctggtcgacgtggtgcacaccctgaagcag
gtggtctgcgtgaaaggctga
DBGET
integrated database retrieval system
