Caldimonas brevitalea: AAW51_4915
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Entry
AAW51_4915 CDS
T04216
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pbh
Caldimonas brevitalea
Pathway
pbh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AAW51_4915 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbh03021
]
AAW51_4915 (rpoC)
03400 DNA repair and recombination proteins [BR:
pbh03400
]
AAW51_4915 (rpoC)
Enzymes [BR:
pbh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AAW51_4915 (rpoC)
Transcription machinery [BR:
pbh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AAW51_4915 (rpoC)
DNA repair and recombination proteins [BR:
pbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AAW51_4915 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AKJ31606
UniProt:
A0A0G3BW51
LinkDB
All DBs
Position
complement(5748012..5752241)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFSIMSEDDYDAKRTEYGDEFIALM
GAEGIQKLLAEMDLDVEIDKLRNDMTGSELKIKKNSKRLKVMEAFKKSGIKPNWMILEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPVL
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEARA
LMLASNNVLFPANGEPSIVPSQDVVLGLYYATRERTNGKGEGMVFSDIGEVHRALDNAVV
EITARISVRLVEYSKDKNTGEFIPETKLVETTVGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKDTVVFADKLLQSGFRLATRAGISIAIDDMLVPPEKHLIIERAEKEV
KEIEQQYVSGLVTAGERYNKVVDIWGKAGDEVGKVMMTQLAKQKVIDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFNSTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCTTSNGISMRALVEGGEVIESLRDRILG
RVTATEVVHPETQEGLLGAGDMLDEDALDQIEAAGVDEVKVRTPLTCATRFGLCAKCYGR
DLGRGGLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATRAAVASSVEAKSDGIIGFN
PTMRYVTNGKGELVVISRSGEIIISDQHGRERERHKVPYGATLNVKADQQIKAGTILANW
DPLTRPIITEFAGRAKFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLL
DPSGNEVKIPGTDHSVTIGFQVGSLIQIRDGQDLAPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGILAEVTGTVSFGKETKGKVRLQITDPDGKVWEELVPKEKNILVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVQIVNPGDTNYIAGEQVERSELLDTNDRMRAEGKVDATHSDVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAFHQARKAKEEMDEQERRA
IAMQEAEEMAALQMAQVDAGDEGGAPSGE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcttgttggaccttttcaagcagttcacccccgacgaacacttcgacgcgatc
aagatcgggctggcgtcgcccgagaagatccgctcgtggtcgttcggcgaggtgaagaag
cccgagaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggtgtcgaagtcacccagaccaaggtgcgccgcgag
cgtatgggtcacatcgacctggccgcgccctgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgtacgtcgtggtcgaccccggcatgacgccgctgaagaagttctcgatcatg
agcgaggacgactacgacgcgaagcgtaccgagtacggtgacgagttcatcgcgctgatg
ggggccgaaggcatccagaagctgctcgccgagatggacctcgatgtggagatcgacaag
ctccgcaacgacatgaccggctccgagctcaagatcaagaagaactcgaagcgcctgaag
gtcatggaggcgttcaagaagtccggcatcaagccgaactggatgattctcgaagtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctctaccgtcgtgtcatcaaccgcaacaaccgcctggcgcgcctg
ctcgaactgaaggcgcccgagatcatcgtgcgcaacgaaaagcgcatgttgcaggaagcg
gtggattcgctgctcgacaacggccgtcgcggcaaggcgatgacgggtgcgaacaagcgt
gccctcaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgtcagaacctg
ctgggcaagcgggtcgactactccggccgttccgtcatcaccgtgggcccgacgctcaag
ctgcaccagtgcggtctgcccaagctgatggcgctggagctgttcaagcccttcatcttc
tcgcgcctggaggcgatgggcatcgccaccaccatcaaggcggcgaagaaggaagtggaa
gccggcacgccggtggtgtgggacatcctggaagaggtgatcaaagagcaccccgtcctg
ctgaaccgcgccccgacgctgcaccgcctgggcatccaggcgttcgagccggtgctgatc
gaaggcaaggcgatccagctgcacccgctggtctgcgcggccttcaacgccgacttcgac
ggcgaccagatggccgtccacgtgccgttgtcgatcgaagcgcagatggaagcgcgcgcg
ctgatgctcgcctccaacaacgtgctgttcccggccaacggcgagccgtccatcgtcccg
tcgcaagacgtggtgctgggcctctactacgccacccgtgagcgcaccaacggcaagggc
gagggcatggtgttctccgacatcggggaagtgcaccgtgcgctcgacaacgccgtggtc
gagatcaccgcgcgcatcagcgtgcgcctggttgagtacagcaaggacaagaacacgggc
gagttcatccccgagaccaagctggtcgagaccactgtcggccgtgccttgctgtccgag
atcctgcccaagggcctgccgttctcgaacatcaacaaggcgctgaagaagaaagagatc
tccaagctcatcaacgtgtccttccgcaagtgcggtctgaaggacacggtggtgttcgcc
gacaagctgctgcagtcgggcttccgcctggccacgcgtgccggcatctcgatcgcgatc
gacgacatgctggtgccgcccgagaagcacctgatcatcgagcgcgccgagaaggaagtg
aaggagatcgagcagcagtacgtctccggtctggtcacggccggcgagcgctacaacaag
gtcgtcgacatctggggcaaggccggtgacgaagtgggcaaggtcatgatgacccagctc
gccaagcagaaggtcatcgaccgccacggcaaggaagtcgaccaggagtcgttcaactcc
atctacatgatggccgactccggcgcccgcggttccgccgcccagatccgccagctggcg
ggcatgcgcggcctgatggctaagccggacggctcgatcatcgagacgcccatcacggcg
aacttccgtgaaggcctgaacgtgctgcagtacttcaactccacgcacggcgcccgtaag
ggtctggccgacacggcgttgaagacggcgaactccggctatttgacgcgtcgtctggtc
gacgtgacgcaagacctggtggtcaccgaagacgattgcacgaccagcaacggcatctcg
atgcgcgcgttggtcgaaggcggtgaggtgatcgaatcgctgcgcgaccgcattttgggt
cgcgtcaccgcgaccgaggtggtgcacccggagacgcaggaaggcctgctgggtgccggc
gacatgctcgacgaagacgcgctcgaccagatcgaggctgctggcgtcgacgaggtcaag
gtgcgcacgccgctgacctgcgcgacccgtttcggcctgtgcgccaagtgctacggccgt
gacctcggccgcggcggcctggtgaacaccggcgaagcggtgggcgtgatcgcggcgcag
tcgatcggcgaacccggtacgcagctgacgatgcgcacgttccacatcggtggcgcggcg
acgcgtgcagcggtggcgtcgagcgtcgaggccaagagcgacggcatcatcggcttcaac
ccgacgatgcgctacgtgaccaacggcaagggcgagctggtggtgatctcccgttccggc
gagatcatcatctccgaccagcacggtcgcgagcgcgagcgtcacaaggtgccgtacggt
gcgacgctcaacgtcaaggccgaccagcagatcaaggccggcaccatcctcgccaactgg
gacccgctgacccgcccgatcatcacggaattcgccggtcgtgcgaagttcgagaacgtc
gaggaaggcgtcacggttgccaagcaggtcgacgaggtgacgggtctgtcgacgttggtc
gtgatcgacccgaagcgccgtggtgctgccaaggtggtgcgtccgcaggtcaagctgctc
gacccgtccggcaacgaggtgaagatccccggcaccgaccactcggtgacgatcggcttc
caggtcggctcgctgatccagatccgcgacggtcaggacctggcgcctggtgaagtgctg
gcgcgtatcccggtcgaaggccagaagacccgtgacatcaccgggggtctgccccgcgtg
gccgagctgttcgaggcgcgttcgccgaaggacaagggcatcctcgcggaagtcaccggc
acggtgtcgttcggcaaggagaccaagggcaaggtgcgtctgcagatcaccgacccggac
ggcaaggtctgggaagagctggtgccgaaggagaagaacatcctcgtgcacgaaggccag
gtggtgaacaagggcgaactgatcgtcgacggcccggccgatccgcaggacatcctgcgt
ctgctgggcatcgaagagctggcccgctacatcgtcgacgaagtgcaggacgtgtaccgt
ctgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtgcagatcgtcaacccgggcgacacgaactacatcgccggcgagcaggtcgagcgt
tcggagctgctggacaccaacgaccgcatgcgcgccgaaggcaaggtcgatgcgacacac
agcgatgtgctgctgggcatcaccaaggcctcgctgtcgaccgactccttcatctcggcg
gcctccttccaggagaccacccgcgtgctcaccgaggctgccatcatgggcaagcgcgac
gagctgcgtggcctgaaggaaaacgtcatcgtgggtcgcttgatcccggccggtaccggt
ctcgccttccaccaggcccgcaaggccaaggaggaaatggacgagcaggaacgccgcgcc
atcgcgatgcaggaagccgaagaaatggcggcgctgcagatggcgcaggtggatgccggc
gacgagggtggggcgccgagcggcgagtga
DBGET
integrated database retrieval system
