Python bivittatus (Burmese python): 103050278
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Entry
103050278 CDS
T03091
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pbi
Python bivittatus (Burmese python)
Pathway
pbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103050278 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbi03019
]
103050278 (MTREX)
03041 Spliceosome [BR:
pbi03041
]
103050278 (MTREX)
03009 Ribosome biogenesis [BR:
pbi03009
]
103050278 (MTREX)
03016 Transfer RNA biogenesis [BR:
pbi03016
]
103050278 (MTREX)
Enzymes [BR:
pbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103050278 (MTREX)
Messenger RNA biogenesis [BR:
pbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103050278 (MTREX)
Spliceosome [BR:
pbi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103050278 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
103050278 (MTREX)
Ribosome biogenesis [BR:
pbi03009
]
Eukaryotic type
Pre-60S particles
Helicases
103050278 (MTREX)
Transfer RNA biogenesis [BR:
pbi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103050278 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
103050278
NCBI-ProteinID:
XP_007421403
UniProt:
A0A9F2N5P0
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MADAFSDELFSVFEDDAASGSGLKETKGISEAATSSKSGKQRDGKSLAPAKIQTKKKRDA
EVNSADITALGKRPKVEDFTTEDLNLADVMPKVKVQAVETIEGCTHEVALPADADFIALK
ARTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVI
FTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREV
AWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHV
IYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKG
GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEEVFNN
AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPT
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVN
NLEQQYNEIEIPNEENVIIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNED
DDFGWGVVVNFSKKSNVKLNSGELDPLYIAEVLLHCSKESLKNSATEAAKPAKPDEKGEM
QVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGIK
DPGLKKVIQKIEAFEHRMYSHPLHNDSNLETVYKLCERKTQIAVDIKAAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQAT
ALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEENYLNSFRPNL
MDVVYTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
LYVQYYINTCILKCRIYLQAI
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcagcgatgagctgttcagcgtgtttgaagacgatgccgcctccggc
tctggcttgaaggagacgaaggggatatccgaggcggccacttcaagcaagtcaggaaaa
caacgagatggcaaatctttggcacctgcaaaaatccaaaccaaaaaaaagcgtgatgca
gaagttaatagtgcagatattacagctttgggaaagagaccaaaggtggaagacttcacc
acggaagatcttaatttggcagatgtgatgccaaaagtaaaggtacaagctgttgaaact
attgaaggctgtacacatgaggttgctcttcctgcagatgcggacttcatagccctgaaa
gcaagaaccggaaaagctgcaaaggaatatccattcattcttgatgctttccaaagagaa
gctattttgtgtgtggataacaatcagtctgttttagtatctgctcatacctcagcaggg
aaaactgtatgtgcagagtatgccattgctctggctttaagagaaaaacagcgggtgata
tttaccagtcctattaaagctcttagtaaccaaaaatatcgtgagatgtatgaagaattt
caagatgttggcttgatgactggggatgtcaccatcaatcctacggcatcttgccttgta
atgaccacagagattttgagaagtatgctttacagaggttctgaggtcatgcgtgaagtt
gcttgggttatatttgatgaaattcattacatgagagattcagaacgtggtgtggtatgg
gaagaaaccattattttacttcctgataatgttcactatgtgtttctttctgccactatt
ccaaatgcacgccagtttgctgaatggatatgccatcttcacaaacagccttgccatgtg
atctacacagattacagaccaactcctttgcaacattatatttttccagcagggggagat
ggacttcaccttgtagttgatgaaaatggtgattttagagaagataattttaatacagcc
atgcaggtacttcgtgatgcaggtgatttagccaaaggagaccagaaaggcaggaaagga
ggaaccaaaggtccctcaaatgtatttaagattgtaaagatgatcatggaaagaaacttc
caaccagtaattatattcagtttcagtaagaaagattgtgaagcctatgcacttcagatg
acaaaactggatttcaacacagatgaagaaaaaaggatggttgaagaagtgtttaataat
gcaattgactgtttgtctgatgaagacaagaagctcccacaagttgaacatgtgcttcca
cttttaaaacgaggtattggaatccatcatgggggcttacttcccattttgaaggaaacc
atagaaattcttttctctgaaggactgataaaggctttatttgctacagagacttttgct
atgggaataaacatgccagcaaggacagtactatttacaagtgcccggaagtttgatggg
aaagatttccgatggattacctcaggtgaatacattcaaatgtctggtcgtgctggccgc
cgaggcatggatgatcgaggaatagtcattttaatggtggatgagaagatgagtccaaca
gttggaaaacaacttctaaagggatctgctgaccctttaaacagtgctttccatctgacc
tacaacatggtactaaatttgctgcgtgtagaagaaattaatccagaatacatgttagaa
aaatctttttaccagttccaacattatagagctattccaggagtagttgaaaaagttaat
aatttggaacagcagtacaatgagattgaaattccaaatgaagaaaatgtgatcatctat
tataaaatcagacagcagcttgctaaactgggtaaagaaatagaggaatacattcataag
ccaaagtactgcttgccatttttacaacctggaagactggtaaaagtgaaaaatgaagat
gatgattttggctggggagtggtggttaatttttccaagaaatccaatgtgaagcttaat
tctggtgaactggatccactctacattgcggaagtcctcttacactgtagtaaagagagc
ctgaaaaattctgcaactgaagctgcaaagcccgcaaaacctgatgagaaaggggagatg
caggttgttcctgtcctggtgcatcttttgtcagcaatcagtagtgttcgactctatata
cccaaagacctcaggcctcttgataacagacagagtgtactaaaatcaatacaggaggtg
cagagacggtttcctgatggagttcctttgctggatcctattgatgacatggggattaaa
gatccaggtctgaaaaaagtaatccaaaaaatagaagcatttgaacataggatgtattct
catccacttcacaatgattctaatttggaaactgtgtacaaactttgtgaaagaaaaaca
cagattgctgtagacataaaagcagcaaaacgggaattgaaaaaagcaaggactgtttta
caaatggatgagctcaagtgtcgtaaacgtgttcttagaagattgggctttgcaacctct
tcagatgtcatagagatgaaaggacgagttgcttgtgaaatcagcagtgctgatgagctt
ttgctgacagaaatgatgttcaatgggctttttaatgatttatctgcagaacaagcaact
gctttattaagctgctttgtatttcaagaaaattctagtgaaatgcccaaactaactgaa
caattagcaggtcctctccgccaaatgcaggaatgcgcaaaaagaattgctaaagtttca
gcagaagctaaattggaagttgatgaggaaaactacctcaattcatttagaccaaaccta
atggatgtggtatacacatgggccaatggagctacgtttgctcatatatgtaaaatgaca
gatgtctttgaagggagcataattcgatgtatgaggcggctagaggaattgctcagacag
atgtgccaagcagcaaaggccattggaaatacagaactggaaaacaaatttgcagaaggt
ttgtatgtacaatattatataaatacgtgcatcttaaaatgtagaatatatttacaagca
atttaa
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integrated database retrieval system
