Paraclostridium bifermentans: KXZ80_00550
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Entry
KXZ80_00550 CDS
T07479
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pbif
Paraclostridium bifermentans
Pathway
pbif03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KXZ80_00550 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbif03021
]
KXZ80_00550 (rpoC)
03400 DNA repair and recombination proteins [BR:
pbif03400
]
KXZ80_00550 (rpoC)
Enzymes [BR:
pbif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KXZ80_00550 (rpoC)
Transcription machinery [BR:
pbif03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KXZ80_00550 (rpoC)
DNA repair and recombination proteins [BR:
pbif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KXZ80_00550 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UAG18259
LinkDB
All DBs
Position
73260..76748
Genome browser
AA seq
1162 aa
AA seq
DB search
MFELNNFESIKIALASPEKIRQWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYRRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPMSHIWYFKGIPSRMGLLLDM
SPRSLEKILYFASYVVTNPGETGLNEKQLLTEKEYRTAVEKYGYNTFEVGMGAEAVKKLL
QNIDLEQQSKELRAELKDSTGQKRVRTIRRLEVVEAFKKSGNKPEWMILDAIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPK
KMALELFKPFVMDRLVKEGYAHNIKSAKSIVEKVKPEVWDVLEDVIEGHPVMLNRAPTLH
RLGIQAFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNI
LAPKDGSPITTPSQDMVLGCYYLTIEAQEGARGTGMIFKDYNEMMLAYDNKAVTLHSLVK
VRRTVEGVGTQLVEATVGRFIFNENIPQDLGFVDRNEDKFALEVDFLADKKSLGKIIDKC
FRKHGNTVTAEMLDHIKSLGFKYSTRGGITVAVADMKIPEAKKGYITEAEGKVDKYEKAY
RRGLISNEERYERVIETWTETTEKVTDALMANLDRLNNIFIMAHSGARGSKNQIRQLAGM
RGLMANASGKTVEIPVKSNFREGLSVLEYFTSSHGARKGLADTALRTADSGYLTRRLVDV
SQDVIVRDVDCGTTEDTEIFAIKDGNEVIEELYDRIVGRYTIDPVIHPETGEVIVEADAM
IQEDQAEKIIEAGIKIVKIRTVLNCRTNHGVCSKCYGRNLATGKEVNIGEAVGIIAAQSI
GEPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPKGLATITEVSGRVEIDETGKRK
EATVVPEQGEAQVYAIPYGSRLRVKNGQFVEAGEALTQGSINPHDIVRVKGIEGVQDYVV
KEVQRVYRMQGVDINDKHIEVIVRQMLSKVKVEDPGDTDLLPGGYEDVLTFNKTNEEAEA
QGLRPASAKRVLLGITKASLATESFLSAASFQETTRVLTEAAIKGKEDHLIGLKENVIIG
KLIPAGTGMKRYKNIAVEKIEE
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaactaaacaatttcgagtcaataaaaatagcattggcttctccagaaaaaata
agacaatggtctagaggagaagtaaaaaagcctgaaacaataaactaccgtacacttaaa
cctgagaaagatggtcttttctgtgaaagaatatttggaccgcaaaaggactgggagtgt
cactgtggaaaatacagaagagttagatacaaaggtgttgtttgtgatagatgtggagta
gaagtaactaaagcaaaggtaagaagagaaagaatgggacatatagagctagcagctcct
atgtctcatatctggtacttcaaaggtataccaagtagaatgggacttctacttgatatg
tctcctagatcattagaaaaaatattatactttgcatcttatgtagtaactaatcctggt
gaaactggattaaatgaaaagcaattattaacagaaaaagaatacagaactgctgtagaa
aagtacggatataatactttcgaagtaggaatgggagctgaagctgttaagaagctttta
caaaacatagatttagagcaacaaagtaaagaattaagagctgaactaaaagatagtaca
ggtcaaaaaagagttagaactataagaagattagaagttgtagaagcatttaagaaatct
ggaaataaaccagagtggatgatattagatgctattccagttataccacctgatttaaga
ccgatggttcaattagatggaggaagatttgcaacatctgacttaaatgacttatacaga
agagttataaatagaaataatagattaaagagattattagagcttggagctccagatatc
attgtaagaaatgagaagagaatgcttcaagaagctgtagatgctttaatagacaatggt
agaagaggtagaccagtaactggaccaggaaatagaccattaaagtcgttatcagatatg
cttaaaggtaagcaaggacgtttccgtcaaaacttacttggtaagcgtgttgactactca
ggacgttctgttatagttgttggaccagaacttaaattctatcaatgtggtcttcctaag
aagatggctcttgaattattcaagccatttgttatggatagattagttaaagaaggatat
gcacacaacataaaaagtgcaaaatctatagtagaaaaagttaaaccggaagtttgggac
gtattagaagatgttatagaaggacatccagtaatgcttaaccgtgctccgactcttcat
agattaggtatacaagcatttgaaccagttttagttgaaggaaaagctataaagttacat
ccattagtatgtacagcatacaacgctgacttcgatggtgaccaaatggcggtacacgtt
cctttatctgttgaagcccaagctgaggcaagattcttaatgttatctgtaaataacata
cttgctcctaaagatggttctcctataactactccttctcaggatatggttttaggatgc
tactacttaacaatagaagctcaagaaggtgctagaggtactggaatgatcttcaaagat
tataatgaaatgatgcttgcttatgataataaggcagttacattacactcattagttaaa
gtaagaagaactgttgagggtgttggaactcaattagtagaagcgactgttggtagattt
atattcaatgaaaatatacctcaagacttaggattcgttgatagaaacgaagataaattt
gctttagaagtagatttcttagcagataaaaagtctttaggaaaaataatagataagtgt
ttcagaaaacatggaaacacagtaactgctgagatgttagaccatataaaatctttagga
tttaaatattctacaagaggtggtataactgttgcagttgcagatatgaaaataccagaa
gctaagaaaggttatataactgaagctgaaggtaaggttgataaatatgaaaaagcatat
agaagaggtcttatatctaacgaggaaagatatgagagagtaatagaaacttggacagag
actactgaaaaagttacagatgctcttatggctaacctagatagattaaacaacatcttc
ataatggctcactctggagccagaggttctaagaaccagataagacagttagctggtatg
cgtggtctgatggccaatgcatctggtaagacagttgaaataccagttaaatctaacttc
cgtgaaggtttatcagtacttgaatacttcacatcttcacatggagctagaaagggtctt
gccgatacagctctacgtacagctgactcaggatacttaacaagaagacttgttgatgtc
agtcaagatgttattgttagggatgttgactgtggaacaacagaagatacagaaatcttt
gcaataaaagatggaaatgaagtaatagaagaactatatgatagaatagttggaagatat
actatagatcctgtaattcacccagaaacaggtgaagtaatcgttgaagctgatgctatg
atacaagaagatcaagctgaaaagattatcgaggctggaataaaaatagttaagataaga
acagttcttaattgtagaactaaccatggagtatgttctaagtgttatggtagaaactta
gctactggtaaagaagttaatataggagaagctgttggtataatagctgctcaatcaatc
ggtgaacctggtactcagcttacaatgcgtacattccatacaggtggggttgccggagga
gatataacacaaggtcttccaagggtagaggaattatttgaagctagaaagccaaaaggt
cttgctacgataactgaagtatcaggtagagtagagatagatgaaactggtaaaagaaaa
gaagctacagtagttccagaacaaggtgaagcgcaagtatatgctataccatatggttca
agattaagagttaagaatggtcaatttgtagaagctggagaagctttaactcaaggatca
ataaatcctcatgatatagtaagagttaaaggtattgaaggtgttcaagactatgttgtt
aaagaggttcaaagagtttatagaatgcaaggggttgacatcaacgataaacatatagaa
gtaattgttagacaaatgctatctaaagttaaagttgaagatccaggtgatactgattta
ttaccaggaggatatgaagatgttcttacattcaataaaacaaatgaagaagctgaagct
caaggtctaagacctgcatcagctaagagagttttacttggtataactaaagcttctctt
gcaacagaatctttcttatcagctgcatcattccaagaaactactagagtattaacagaa
gctgctataaaaggaaaagaagatcacttaataggtcttaaagaaaatgttataataggt
aagttaataccagcaggaacaggaatgaagagatacaaaaatatagcagttgaaaaaata
gaagaataa
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