Paraclostridium bifermentans: KXZ80_04375
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Entry
KXZ80_04375 CDS
T07479
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pbif
Paraclostridium bifermentans
Pathway
pbif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KXZ80_04375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbif03019
]
KXZ80_04375
03016 Transfer RNA biogenesis [BR:
pbif03016
]
KXZ80_04375
Enzymes [BR:
pbif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KXZ80_04375
Messenger RNA biogenesis [BR:
pbif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KXZ80_04375
Transfer RNA biogenesis [BR:
pbif03016
]
Prokaryotic type
tRNA degradation factors
KXZ80_04375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
DUF4191
S1_2
KH_N4BP1_2nd
Mug135_C
GcvP2_C
Microp_apicomplexa_15
Motif
Other DBs
NCBI-ProteinID:
UAG18951
LinkDB
All DBs
Position
896354..898483
Genome browser
AA seq
709 aa
AA seq
DB search
MFEHKVFKMDFAGRELSVEIGKIAELASGSAILQYGETMVMVNTSKSAQPRDGIDFFPLS
VDYEEKLYSVGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQVVATVLSV
DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVSVGLVDGAFVINPTAEQREKSSLHLVVS
GTKDAIMMVEAGAEEIPDELMLEAILFAHKEIKKVVEFIETIVAEVGKEKIEVTLFEINA
DVEKAVREFATDKMKEAVKTVEKLERMEKMDAVKEATFENFEDIVEEFGQDIEETLHAII
KEQVRKLIVHENVRPDNRKPDEIRPIWCDNGFIPRAHGSGLFTRGQTQVMSIATLGALGD
VQILDGLDEEESKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVIPSKEDF
PYAIRVVSEVLSSNGSTSQGSVCGSTLSLLDAGVPLKDMVAGIAMGLIKHDDKVAVLSDI
QGMEDHLGDMDFKVAGTEHGITAIQMDIKIAGIDEEVLRTALKQAKVGRIHILNEMRKTI
AAPKPELSKYAPKIVTMNINPDKIRDVIGPGGKIITKIIDETGVKIDIEQTGEVFISGID
AEMIAKAQELINNIVAEAEVGETYTGKVTRIMNFGAFVEVLPGKEGLLHISHIAHERVNK
VEDVLNIGDEVTVKVTEIDEKGRVNLSRKALLPKPEKKEVKEVKENKEK
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaacataaagtttttaaaatggattttgcaggaagagagctttctgttgaaata
ggaaaaattgccgaactagctagtggaagtgccatacttcagtatggtgagactatggtt
atggttaatacttcaaagtcagcgcaaccaagagatggaatagatttcttccctttaagt
gttgattatgaagaaaaattatattcagtaggaaagatacctggaggattcttaaaaaga
gaaggaaaaccttcagaaaaagctatacttacatcaagacttatagatagacctataaga
cctttattcccaaaaggatttagaaatgatgtacaagtagtagcaacagttttatcagtt
gatcaagattgtacacctgatatagtagcaatgataggttcatctatagcattatctata
tctgatataccatttaatggacctacaggatctgtatcagtaggattagtagatggtgca
tttgttataaatccaactgctgagcaaagagaaaagagttctctacatcttgtagtatca
ggaacgaaagatgctataatgatggttgaagcaggtgcagaagaaataccagatgaatta
atgttagaagctatattatttgctcataaagaaattaaaaaagttgttgagtttatagag
actatagttgctgaagttggaaaagaaaaaatagaagttactctttttgaaataaatgca
gacgtagaaaaagctgttcgtgaatttgctacagataaaatgaaagaagcggttaaaact
gtagaaaagcttgaaagaatggaaaaaatggatgcagtaaaagaagctacttttgaaaac
tttgaagatatagtagaagaatttggtcaagatatagaagaaacattacatgctataata
aaagagcaagtaagaaagcttatagtacatgaaaatgtaagaccagataacagaaagcca
gatgaaataagacctatatggtgtgataatggattcataccaagagctcatggatctgga
ttatttacaagaggacaaactcaagtaatgtctatagcaactttaggagctttaggtgat
gttcaaatacttgatggacttgatgaagaagaaagtaaaagatatatgcatcattacaac
ttcccagcatacagtgttggagaagctagaccttcaagaggtccaggtagaagagagata
ggacatggagcattagctgaaagagcattacttcctgtgataccttctaaagaagatttc
ccatatgcaataagagttgtttctgaagttttaagttcaaatggatcaacatctcaaggt
agtgtatgtggatcaacattatctcttttagatgcaggtgtgccattaaaagatatggta
gcaggtatagctatgggacttataaaacatgacgataaagttgcggtactttcagatata
caaggtatggaagaccacttaggagacatggactttaaagttgcaggtactgagcacggt
ataactgctatacaaatggatataaaaatagctggtatagatgaagaagttttaagaact
gctttaaagcaagctaaagtaggtagaattcatatattaaatgaaatgagaaaaactata
gctgctcctaaaccagagctttctaaatatgcacctaagatagtaacaatgaatataaat
ccagataagataagagacgttataggacctggtggaaaaataataactaagattatagat
gaaactggagttaaaatagatatagaacaaactggagaagtatttataagtggaatagac
gctgaaatgatagctaaggctcaagaacttataaataatatagttgcagaagctgaagta
ggtgaaacttacacaggtaaagtaactagaataatgaattttggagcattcgttgaagta
cttccaggaaaagaaggactacttcacatatctcatatagctcatgaaagagtaaataag
gttgaggatgttttaaatataggtgatgaagtaacagttaaggtaactgaaatcgatgaa
aaaggtagagttaacttatctagaaaagcacttttaccaaaaccagagaaaaaagaagtt
aaagaagtaaaagaaaataaagaaaaataa
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