Paraclostridium bifermentans: KXZ80_13810
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Entry
KXZ80_13810 CDS
T07479
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbif
Paraclostridium bifermentans
Pathway
pbif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KXZ80_13810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbif03019
]
KXZ80_13810
03009 Ribosome biogenesis [BR:
pbif03009
]
KXZ80_13810
Enzymes [BR:
pbif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KXZ80_13810
Messenger RNA biogenesis [BR:
pbif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KXZ80_13810
Ribosome biogenesis [BR:
pbif03009
]
Prokaryotic type
rRNA helicases
KXZ80_13810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
VWA_2
Motif
Other DBs
NCBI-ProteinID:
UAG17833
LinkDB
All DBs
Position
complement(2853403..2854995)
Genome browser
AA seq
530 aa
AA seq
DB search
MNIVKFDDLPINENIKKAVLEMGFEEPSPIQVQAIPKIITGVDIIGQAQTGTGKTAAFSI
PILDMVDPEDKSLQAVVLCPTRELAIQVSSEIRKIGKYMHGIKTLPVYGGQPIDRQIKSL
KSGVQIVIGTPGRIIDHINRKTLKLDKVKMVILDEADEMLDMGFREDIEMILNETPENRQ
TTFFSATMPKGILDLTKRFQKNPEHVRIVRKELTVPNIKQYYIETKAANKLEVLCRLVDV
YNPKLSVVFCNTKRGADELVSDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVAT
DVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRNGVSFTFVFGKSMRKMKDIER
YTKSKLEKHSIPSISDVEEKKVSLFFDQVKSTIEEGHLTKQVQWLENFCKEEDYDTLDIA
AALVKLALGDQAKEEIIEESHSTGAESGMTRLFINIGRTQKVQAKDIVGAIAGEVGIPGK
LVGTIDIYDKYTFVEIPKKHTRKVLDKMKNIKIKGNKVNIEKANNKRKSK
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagttaaattcgatgatttaccaataaatgagaacataaaaaaagctgtatta
gaaatgggattcgaggaaccatctccaatacaagttcaagcaataccaaaaataattact
ggagtagatattatagggcaagcacaaacaggtacggggaaaacagcagcatttagtata
cctatattagatatggtagacccagaggacaagagtctacaagcggtagttttatgtcca
acaagagaattagcaatacaagtttcaagtgaaataagaaaaataggtaagtacatgcac
gggataaaaactttacctgtatatggaggacaacctatagacagacaaataaagtctctt
aagagtggcgttcaaatcgttataggaactccaggtcgtataatagaccatataaatcgt
aagactttaaagttagataaagtaaaaatggttatattagatgaagcggatgaaatgcta
gatatgggattcagagaagacattgagatgattttaaatgaaactcctgaaaatagacaa
acgactttcttctcagctactatgcctaagggtatattagatttaacaaagagattccaa
aagaatcctgagcatgtaagaatagttagaaaagaacttacagttcctaatataaaacaa
tattatatagaaactaaagctgctaataagttagaagtattatgcagattagtagatgta
tacaaccctaaattatcagtagtattttgtaacacaaaaagaggtgctgatgaattagtt
agtgatttacaagcaagagggtattttgcagatgcgctacatggagatttaaagcaaact
caaagagatatagttatggataagtttagaaatggaactatcgatatcttagttgctaca
gatgttgctgctagaggaatagatgttgatgatgtagaagctgtatttaactatgattta
ccacaagatgaagagtactatgtacacagaatcggaagaacaggaagagctggtagaaat
ggagtatcattcacttttgttttcggaaaatcaatgagaaagatgaaagatatagaaaga
tacactaaatctaaattagaaaaacatagcataccttcaatatcagatgttgaagagaaa
aaagtaagcttattctttgatcaagtaaaatctactatagaagaaggtcatttaacaaag
caagtacaatggttagaaaacttctgcaaagaagaagattatgatactttagatatagct
gctgctttagttaaattagctctaggtgatcaagcaaaagaagaaataatagaagaaagt
catagtacaggtgctgagtctggaatgactagattatttatcaatataggtagaacacaa
aaagttcaagctaaagatatagttggggctatagctggagaagttggaataccaggtaaa
ttagttgggactatagatatatatgataaatatacttttgttgagataccaaagaaacat
actagaaaagttcttgataaaatgaagaacataaaaataaaaggaaacaaagttaatata
gaaaaagcaaataataagagaaaaagtaaataa
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