KEGG   Prevotella bivia: QP022_06480
Entry
QP022_06480       CDS       T09089                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
pbiv  Prevotella bivia
Pathway
pbiv03420  Nucleotide excision repair
pbiv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pbiv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    QP022_06480
   03430 Mismatch repair
    QP022_06480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbiv03400]
    QP022_06480
Enzymes [BR:pbiv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     QP022_06480
DNA repair and recombination proteins [BR:pbiv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     QP022_06480
   MMR (mismatch excision repair)
    Other MMR factors
     QP022_06480
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 PcrA_UvrD_tudor AAA_30 AAA_12 AAA_11 ResIII DEAD
Other DBs
NCBI-ProteinID: WIL18862
LinkDB
Position
2:201145..203664
AA seq 839 aa
MILDDLNSYQREAVEYCNGPSLVVAGAGSGKTRVLTYKIAYLLEKGLKPWNILALTFTNK
AAREMKERIAKITHSHDTNRLYMGTFHSIFARILRAEAHHIGYNSNFTIYDESDSRSLLK
NIIKAMGYDEKVYRPNSVHHFISMAKNHLITAEEYAHDKLAIDRDKQARMPYIYSIYQAY
EARCKQANAMDFDDILVNTYVLLRDNQEVRQKYATLFEYILVDEYQDTNFAQVSIIQQLA
ELHQRVCVVGDDYQSIYSFRGANIDNILDFKQKFIGAKTFKLERNYRSTQLIVQAANSLM
KHNERQIPKEVYSQEDEGDKLQYKPCYSDKEEALIVAKEIQRIKRADNATYSDFAILYRT
NAQSRTFEDELRKQTVPYKIIGGLSFYQRKEIKDIIAYFRLVANNDDEEAFRRIINYPAR
GIGNTTIQKIVDCASKNNVSLWQVITNPLLYDLNVNKGTLAKINGFIELISNFIDRLSTT
DAYLLGKDIIQLSGISADIYSSTDPEALSRQENLEEFLSAMQDFVETGREEGREDYLYLT
DYLQEVALYSDADKADDNSPKVTLMTVHAAKGLEFPTVFIVGLEENIFPSPMSASSKREI
EEERRLLYVAITRAERHCIITNAKNRFRYGTMQFDNPSRFIKDIDPAFISEDSSTSFSNT
GYGGSRMAWDEKRSYTSSNSDNYRDYEPNRPYTGSRLWGSEYKQLGSRFQNNNPVASQFR
ADPQPKLTQRKRPEVAIDPLSDRTKRRILSEGGNLCRLTTAIKNGGRVIQNTPSNSKNFS
HSTSSTNSLTEGAIIEHQRFGIGKVIKVEGVGENAKATVDFQNIGQKQLLLKFAKYKIL
NT seq 2520 nt   +upstreamnt  +downstreamnt
atgatattagacgatttgaactcctatcagcgcgaagctgttgaatattgtaatggacca
tcacttgttgtagctggtgcaggttcaggtaaaacacgtgtcctcacctataaaatagcc
tatcttttagagaaaggattaaagccatggaatatacttgcgttaacttttaccaataag
gcagcacgtgaaatgaaagaacgtattgcaaagatcacccattctcatgatactaatcgt
ctttatatgggtacgttccattctatctttgctcgtattcttcgtgcagaagctcatcat
attggctataattcaaactttactatttatgatgaaagcgattcacgctcactgctaaag
aatataatcaaggcaatggggtatgatgaaaaggtatataggcctaattcagtgcatcat
tttatatcaatggcaaaaaatcacttaattactgctgaagaatatgcacatgataagttg
gctattgaccgcgataaacaagcacgtatgccctatatttattccatttatcaagcatat
gaagctcgttgtaagcaagctaatgctatggatttcgatgatattctcgtaaatacctac
gttttattgcgggataatcaggaggtaaggcagaaatatgctacactatttgaatatatc
cttgtggatgagtaccaagataccaacttcgcacaggtgtccatcattcaacaactggca
gaactccatcaacgtgtctgcgtagtgggcgatgattatcaaagtatttactcttttcgt
ggtgctaatattgataatatactagactttaagcaaaaatttattggggctaaaactttt
aagttagagcgtaactatcgttcaactcagctaatagtacaagctgctaactccctaatg
aagcataatgaacgacaaataccaaaagaggtttattctcaagaagatgaaggagataag
ttgcaatataagccttgctatagtgacaaagaagaggctttaatagtagctaaagaaata
cagaggataaaacgtgcagacaatgctacttattccgactttgccattctttataggact
aatgcccaaagtagaacttttgaagatgaattgcgtaagcagactgttccctacaagatt
ataggtggattgtcgttttaccagcgtaaagaaataaaagacattattgcttacttcaga
cttgttgcgaataatgacgatgaagaagcctttagacgtattattaattatcctgcacgt
ggcattggcaatactactattcagaagatagttgattgtgcctcaaaaaataatgtgagt
ctttggcaggttattacgaatccattgctatacgatctaaatgttaacaaaggtacgcta
gcaaaaattaacggtttcatcgagcttatttctaactttattgaccgcctttcaactaca
gatgcctatctattaggaaaagatatcattcaactaagtggtatttctgcagatatttac
tcaagtactgacccggaggcgttatctcgccaagaaaatctcgaagagtttctttcagca
atgcaagattttgtagaaactgggagagaagagggtagagaggactatctctatctaaca
gattatctacaagaggtggcgctctattcagatgccgataaagcagatgataattctccg
aaagtaacacttatgacagtccatgctgcaaaaggacttgagtttcccactgtttttatt
gtaggattggaagaaaatatatttcctagtcctatgtcagcaagctcaaagcgagaaata
gaagaggaacgaagactgctatatgtggccattactcgtgcagaacgtcattgtataatt
acaaatgctaaaaatcgctttcgttacggtacaatgcagtttgataatcccagccgtttt
atcaaagatattgaccctgcattcatatcagaagatagcagcactagcttttctaatact
ggatatggtggaagtcgaatggcatgggatgaaaaaagaagttatacttcatcaaactct
gataactatcgtgattatgaacctaatcgaccttacacaggtagtcgtctatggggaagt
gaatataaacaactaggaagtcgtttccaaaataataatcctgttgctagtcagtttcgt
gccgatccacaacctaagcttacacagcgtaagcgtccagaagtagcaatcgatcctcta
tccgatcgcacaaaacgccgtattctttcagaaggtggtaacttgtgtcggttaacaaca
gccataaaaaatggaggtagagttattcaaaacaccccatctaactcaaaaaatttttca
cattcaacgtctagcactaattcgctaacagaaggtgcgataatagaacatcaacgcttt
ggtataggaaaagttataaaggtggaaggggttggagaaaatgctaaagccacagttgac
ttccaaaatatagggcagaaacaattattgttgaagtttgctaaatataagatactataa

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