Desulfobaculum bizertense: LWC08_00520
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Entry
LWC08_00520 CDS
T07819
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbiz
Desulfobaculum bizertense
Pathway
pbiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LWC08_00520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbiz03019
]
LWC08_00520
03009 Ribosome biogenesis [BR:
pbiz03009
]
LWC08_00520
Enzymes [BR:
pbiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LWC08_00520
Messenger RNA biogenesis [BR:
pbiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LWC08_00520
Ribosome biogenesis [BR:
pbiz03009
]
Prokaryotic type
rRNA helicases
LWC08_00520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
UIJ38079
LinkDB
All DBs
Position
109349..111121
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AA seq
590 aa
AA seq
DB search
MESFKALGLSDEICEALAKKGFSNPTPIQEAVIPRLLGGEKDTIGQAATGTGKTAAFGLP
ILESVEEKAGHVQALVLAPTRELAIQVADEMSSLQGRRRVHILPIYGGQSFGPQFKGLRR
GADIVVGTPGRVIDHIERGSLDLSQLKFLVLDEADEMLNMGFIDDIEAVMNAASPDRRTL
LFSATMPPDILRIARRYMKEFDHVAVKREQRDMPLTEQVYYEVNEGDRFEALCRVIDATE
DFYGLVFCRTRADVDQVAVRLQERGYGAEGLHGEASQAQREKVLESFRRRRIKVLAATDV
AARGIDVQDLTHVVNFALPQDPETYVHRIGRTGRAGRTGRAVTLISPNEFRRLRYIVRNA
NGEIQKGTLPAVQAVVDARKKRLFEGITGVAEKGGMEPFEGFASELVESLGAEQALTAVL
KMAYSDALDPSRYREISEASRRNSRGNGRAEMFFAGGRADGLSPRELVDVVARDAHVNSR
LIQGVRIMARHAIFTVPDEEVEGIERAFRKLAAGAPPLVRRSRDNRRRSSGGGYDRRRND
GGGRPRRDYRGGPRRQGGGYNGNRSEGRGRSENRAPRSDRRPPRSAESNA
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggagagttttaaggcccttggcctttcggacgaaatttgtgaggcgctggccaaaaaa
ggtttcagcaaccccacccccattcaggaagctgtgattcccagactgcttggcggcgaa
aaggacaccattggtcaggctgctaccggtactggtaagaccgcagcctttggtttgcct
attttggaatctgtggaagaaaaagctggtcatgtgcaggcactggtcctggcaccgacc
cgtgaactggccattcaggtggccgacgaaatgagttctttgcagggcaggcgtcgagtt
catattttgcctatctatggtgggcagtcttttggtccgcagtttaaaggactgcgtcgt
ggtgccgacatcgttgttggtactcctggtcgtgtgattgaccacattgagcgtggtagc
ctcgacctctcccagctgaaattcctcgtattggatgaggcagacgagatgctgaacatg
ggcttcattgacgacattgaagctgtcatgaatgctgcatctcccgatcgtcggacactg
ctgttttctgcaaccatgcctccggacattctgcgcattgcccgccgctacatgaaagaa
ttcgatcatgttgccgtgaagcgcgaacagcgtgatatgccgctgaccgagcaggtatac
tacgaagtcaacgaaggcgatcgtttcgaggccctgtgccgcgtgatcgacgctaccgaa
gacttctatggtcttgttttctgccgtacccgtgcagacgttgaccaggttgctgtacgc
ttgcaggagcgtggttacggagcagagggccttcatggtgaggcatctcaggcccagcgt
gaaaaagtgctggagtccttccgccgtcgccgcattaaggttctggctgcaactgacgtt
gctgcccgtggtatcgacgttcaggacctgacgcatgttgtgaacttcgcactgcctcag
gaccccgaaacctacgtgcaccgcattggccgtactggccgtgctggccgtactggtcgc
gctgttaccctgatttcccccaacgagttccgccgcctgcgctacattgtgcgcaatgca
aatggtgaaatccagaagggaaccctcccggcagtgcaggctgttgtggatgctcgcaag
aagcgcctttttgaaggcattactggcgttgcagaaaagggtggcatggagccgttcgaa
ggttttgcttccgaactggttgagtctcttggcgcagagcaggctctgactgctgtgctc
aagatggcatacagcgatgcacttgatccttcccgctaccgcgaaatcagcgaagcctcc
cgccgcaacagccgtggcaatggccgtgctgaaatgttctttgctggtggtcgtgcagac
ggtctgtccccgcgtgagctggttgacgttgttgctcgtgatgcacacgtcaattcccgt
ctcattcagggcgtccgcatcatggctcgccacgccatcttcaccgttccggatgaagag
gttgagggtattgaacgcgcattccgcaagctggccgctggcgctccgccgctggtcaga
cgttctcgcgacaatcgccgccgttcttccggtggtggctatgaccgtcgccggaatgat
ggtggtggacgtcctcgccgcgattaccgtggtggaccccgccgtcagggtggaggctat
aacggaaaccggtccgaaggtcgtggccgttccgaaaatcgtgctccgcgttctgaccgt
cgtccccctcgctctgcagagagcaacgcatag
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