Desulfobaculum bizertense: LWC08_05515
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Entry
LWC08_05515 CDS
T07819
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pbiz
Desulfobaculum bizertense
Pathway
pbiz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LWC08_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbiz03400
]
LWC08_05515
Enzymes [BR:
pbiz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LWC08_05515
DNA repair and recombination proteins [BR:
pbiz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LWC08_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
HHH_5
Viral_helicase1
AAA_11
SLFN-g3_helicase
PIF1
UvrD-helicase
AAA_22
NPHP3_N
NTPase_1
nSTAND3
AAA_28
AAA_16
HTH_IclR
UvrD_C
AAA
ATPase
AAA_5
AAA_24
AAA_18
Motif
Other DBs
NCBI-ProteinID:
UIJ39030
LinkDB
All DBs
Position
complement(1170843..1173017)
Genome browser
AA seq
724 aa
AA seq
DB search
MSDTLRAEIKNIVFYNAENGYLVARANVENEPGLVTVVGNMPEPNPGELLELTGEWTEHP
RFGRQFRIAFSEQVMPATLNGIRRYLGSGMIKGIGPVLAGRLVDTFGTDVLTVLEEEPKK
LLTVEGLGKKKLDKILASWDEQHEVRNLMIFLQTHDIPPTYAARIFKKYGNGAVSRIQEN
PYELAYEIHGIGFKLADRMALRLGFAETAPERMAAAVLYALESAADHGNLFLPLDKLIDG
VDRLIPGVDPEAIHDAVNSLSARKRVHVESLPHQNIEHAVYLMHFYRHEKEISSRFYALC
EHPTPVDLEKISTLLPRLEAEESIELSEEQREAVFGGCENKVFVVTGGPGTGKTTITRVM
VRVLDKLGFKIKLAAPTGRAAKRLSEATGYTASTLHRLLQYSPGGGFGMHEENKLEAQVV
VVDEVSMLDTYLCLALLRALPLTCRLVLIGDVNQLPSVGPGNVLADILNSEAVPSARLTR
IYRQAQESLIVTNAHRVNSGELPIVSSKPAPENDFFWVKQEDSSRIQHLMLQLMERIPAM
YGLDPVRDVQVLTPMHKGDLGTQSLNHLLQEKLNPRKGGITRGSVEFRVGDRVLQTKNNY
DKDVFNGDLGWICEVEPVRGELMVDFEGHMVSYDMQDIDELTPAYAISVHKSQGSEYPAV
IIPVVTQHYMLLQRNLIYTALTRAKKLAVLIGGQRAMSIGIARADSNQRFTHLQYRLQEI
FNGS
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatacactcagagccgaaataaagaacatcgtcttttataatgctgaaaacggc
taccttgtggctcgtgccaatgtggaaaacgaaccgggtttggtaaccgttgtgggcaat
atgcctgagccaaatcccggagaactgcttgagcttactggagagtggaccgagcatccg
cgctttggccgacagttccgcattgctttttcggaacaggtgatgcccgcaaccctgaat
ggcatccgtcgttatctgggttctggcatgattaagggaattggccctgttctggctgga
cggctggtcgatacctttggaacggatgtgctgaccgttcttgaagaagaacccaaaaag
ctattgactgtcgaagggcttggcaaaaagaagctcgataagattttggcctcgtgggat
gaacagcacgaggtgcgcaatctgatgatttttttgcagacccacgacatccccccgacc
tacgcagcacgaattttcaaaaaatatggcaatggtgcggtgtcccgcattcaggaaaac
ccgtacgagctggcctatgagattcatggcattggcttcaagcttgcggaccgtatggcc
ctgcggcttggctttgccgaaactgcgcctgagcgtatggctgcggccgtgctgtatgca
ctggagtctgcggcagaccacggcaacctctttttgccgctggataagctcattgatggc
gttgatcgcctgattcccggtgttgacccagaggcaattcatgacgcggtgaattcactc
tcggcccgaaagcgggtgcatgtggagtctttgcctcaccagaatatcgaacacgctgtg
tacctcatgcatttttacaggcatgagaaggaaatcagctctcggttctatgccttgtgt
gagcatcccacaccagttgatctggaaaagatcagcacgcttttgccccggctggaagct
gaggagtccatcgaactttccgaagagcagcgtgaagctgtttttggtggctgcgaaaac
aaggtctttgtcgttacaggcggtccgggtacaggtaaaaccaccattacccgcgtgatg
gttcgggtgctggacaagcttggattcaaaatcaagctggccgctccaacgggccgcgca
gcaaagcgcctttccgaagccacgggctatactgcctcaacccttcaccgccttttgcag
tattcgccgggcggtggctttggcatgcacgaagaaaacaagcttgaagcacaggtcgtg
gttgtggacgaagtgtccatgcttgatacctacctgtgtcttgccctgcttcgggctttg
cctctgacctgtaggctggtgcttattggtgatgtgaaccagctcccgtctgttggtccc
ggcaacgtgcttgcagatattttgaacagtgaggccgtgcctagtgcccggctgacacga
atttaccgtcaggcgcaggagagcttgatcgtgaccaatgcgcaccgcgtgaacagcgga
gaactgcccattgtgtcgagcaagcctgccccggagaacgattttttctgggtaaagcag
gaagactcctcgcgcattcagcatctgatgctccagcttatggaaagaattcctgccatg
tatggactggaccctgtgcgtgatgtgcaggtactgacgcctatgcacaagggcgatctt
gggacgcagtcactgaatcacctgttgcaggagaagctgaatccacgaaagggcggaatc
acgcgcggaagcgtggagtttcgtgtgggggaccgcgtcctccagaccaagaacaactat
gacaaggacgtctttaatggtgaccttggatggatttgtgaggttgaacctgttcgcggc
gagctgatggttgattttgaagggcatatggtcagctatgacatgcaggatattgatgaa
ctgacacctgcctatgcgatcagtgtgcacaagtcgcagggcagtgaatatccggcggtt
atcattcctgtggtgacccagcactatatgcttttgcagcgaaatttgatttatacagca
ctgacccgagccaaaaagctcgcggtgctgattggtggacagcgggccatgagtattggc
attgcgcgtgcggacagcaaccagcgttttacgcatttgcagtaccgcttgcaggaaatt
ttcaacgggtcctag
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