Desulfobaculum bizertense: LWC08_09555
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Entry
LWC08_09555 CDS
T07819
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pbiz
Desulfobaculum bizertense
Pathway
pbiz03030
DNA replication
pbiz03430
Mismatch repair
pbiz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LWC08_09555 (dnaE)
03430 Mismatch repair
LWC08_09555 (dnaE)
03440 Homologous recombination
LWC08_09555 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbiz03032
]
LWC08_09555 (dnaE)
03400 DNA repair and recombination proteins [BR:
pbiz03400
]
LWC08_09555 (dnaE)
Enzymes [BR:
pbiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LWC08_09555 (dnaE)
DNA replication proteins [BR:
pbiz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LWC08_09555 (dnaE)
DNA repair and recombination proteins [BR:
pbiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LWC08_09555 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HHH_3
Motif
Other DBs
NCBI-ProteinID:
UIJ36984
LinkDB
All DBs
Position
complement(2053403..2056855)
Genome browser
AA seq
1150 aa
AA seq
DB search
MSDFVHLHCHTEYSLLDGAIRLPDLCDKAIEYKMPAVAVTDHGNMFAAAKFFVEAKSKGI
KPIIGSEVYVSKGPHTNFEGADARKRYHLVLLAQNLVGYHNLAKIVTEGYLRGFYYKPRV
SHDVLRKYNEGIIALSACIQGEVVQHVLHEGMDKAIETAQLYESIFPNRFYIEVQANGLE
VQNEANAKLKELAAHTNLPLVATNDCHYLTAADHEAHELLLCVQTNTTIDDPKRFKIETD
ELYFRPPSEMKAEFADCPEAIENTVRIAEQCNVEIRMGKYFFPVYDVPEGKSLDDVMCDM
ARDGLRERLAHIPYEVDEKVYWERLEMELDVITTMGFPGYFLIVQDFINWAKRNHIPVGP
GRGSAAGSLVAYSLRITNLDPLPYNLLFERFLNIERVSMPDIDVDFCERRRTEVIKYVGT
KYGKDSVAQITTFGTMKAKAVIRDVGRAMGMSFPEVNEIAKLIPEDLKMTIDKALKMEPE
IREKMDSDSRVKKLIDISRRLEGLHRHASTHAAGVVISPGDMWNFLPLYKGKKGETVAMY
DMKYVEKVGLVKFDFLGLRTMTVIQDAVDIIAERGKDAPDLDTLSLDDPATYDLYARGDT
DGIFQVESDGMRKYLRMLSPNCFEDLIAMLALYRPGPLSSGMVEEFIKRKHGEVPVVYPL
PELEPVLKDTYGVIVYQEQVMKIAQVVAGYTLGGADLLRRAMGKKIAEAMAEQRHTFYDG
AKKRGVPQEKAKEIFDLMEMFAAYGFNKSHSAAYALISYHTAYLKAHHPTEFMAAMITSE
VNNTDKVLKYISACRDLDIEMLTPDVNSSMRHFTVPADGQIRYGLAGVKNVGDEAIREIV
DARTEGGKFKSMLDMCERVNLRKVTKRVLENLIKAGALDCFDVPRAALLDALERVVAIAQ
KKAKDKNSGQMSLMAMSGMEMPSFPGTGLNTDGPTVEEWEDDEKLQFEKEALGFYLSSHP
LLSFRHELARMKLPTLLQVADYGGGAEVRVACMVTGRKEHITQKGGKMAFCDIEDLTGVG
EAVMFPETYAKSREILEQDQPLLLIGKVSDRDGGPNDDEGAPKKAKLIADEIKILGGALA
GNEEPVLLIKGEDDLTEGGRRRLKDVLARHTGGVRVQLLLRMDEVECKMQLGPKYSVSPT
KEFWKDIESL
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattttgtccatctgcactgccatacggagtacagtctccttgacggcgccatt
cggctgcccgacctgtgtgacaaggcaatagaatataagatgccagctgttgccgtgacc
gatcatggcaacatgtttgctgcggccaagttttttgtggaagccaaatccaagggcatc
aagcccatcattggctcagaagtctatgtgtccaagggaccgcatacgaatttcgagggg
gctgacgccagaaagcgctatcacctcgtccttcttgcccagaacctcgtgggctatcat
aacttggccaaaatcgtgaccgagggctatttgcgtggcttctattacaagccccgtgtc
agtcacgatgttttgcgcaaatataatgagggtatcattgccctgtcggcctgtattcag
ggtgaagtcgtgcagcatgttctgcatgagggcatggacaaggccattgaaaccgctcag
ctgtatgaatcgattttcccaaatcgtttttatattgaagtgcaggccaacggccttgag
gtgcagaatgaggcgaatgccaagctcaaggagctggctgctcacaccaatttgccgctg
gtcgcaaccaacgactgccactatctgaccgctgcggaccatgaagcccatgagctgttg
ctctgcgtgcagaccaacaccaccattgatgaccccaagcgcttcaagattgagacggat
gagctgtatttccggcccccgtcagaaatgaaagcagagttcgctgactgcccggaagct
attgaaaatacggtgcgcattgctgagcagtgcaatgtcgaaatccgtatgggcaagtat
ttcttcccggtctatgacgtgccagagggcaaaagccttgatgacgtcatgtgcgacatg
gcgcgtgatggcctgcgcgagcgtctcgctcacatcccttatgaggttgacgaaaaggtt
tactgggaacgccttgagatggagcttgatgtcatcacgacaatgggcttccccggttac
ttcctgatcgtgcaggactttattaactgggcaaagcgtaaccatatcccggttggtccc
ggccgtggttctgcggctggttcacttgttgcctactccctgcgtatcaccaaccttgat
ccgctcccgtataacttgctgttcgaacgttttctgaacatcgaacgtgtttccatgcct
gatatcgacgtcgacttctgcgaacgtcggcgaaccgaagttatcaagtatgtgggcacc
aagtacggcaaggactctgtggcccagattacgacctttggcaccatgaaggccaaggct
gttatccgtgacgttggccgtgctatgggcatgtcgttcccggaagtgaacgaaatcgcc
aagctgattcctgaagacctcaagatgaccatcgacaaggctctgaaaatggagcctgag
attcgtgaaaagatggattcagacagcagggtcaagaagcttattgatatttcccgcagg
ctcgaaggcctgcaccgccacgcctccacacatgctgccggtgttgttatctcacccggt
gacatgtggaacttccttccgctctacaaaggaaagaagggcgaaacagtggccatgtac
gacatgaaatatgtcgaaaaagtcgggctggttaagtttgactttcttggcctgagaacc
atgaccgttattcaggacgcggtggacatcattgctgagcgtggcaaggatgcgcccgat
ctggacaccctgtcccttgatgatcccgcgacctatgatttgtatgcccgtggcgacact
gacggcatttttcaggttgagtctgatggtatgcgcaaatacctgcgaatgctcagcccc
aactgctttgaagaccttatcgctatgctcgccctgtaccgacccggtccgctgagttcg
ggcatggtcgaagagttcattaagcgtaagcatggcgaagtgcctgtcgtatatccgctg
ccagaactggagcctgtgctcaaggacacctacggcgtcattgtgtatcaggaacaggtt
atgaagattgctcaggtggtcgcaggctacacccttggtggcgctgacctgctccgtcgt
gcaatgggcaagaaaatcgcggaagcaatggcagagcagcgccacacgttctatgatggc
gccaaaaagcgcggcgttcctcaggaaaaggccaaagaaatctttgacttgatggaaatg
tttgcggcttacggcttcaacaagtcgcactccgcagcgtatgccctcatttcctatcat
acggcgtacctcaaggcgcatcatcccacagaattcatggcggccatgattacctcggaa
gtgaacaacaccgataaggtgttgaaatacatttccgcgtgccgtgatctggacattgag
atgctgactccggatgtgaacagctccatgcggcactttaccgtgcctgcggacggccag
attcgctacggccttgctggtgtcaaaaacgttggtgacgaagctattcgtgaaatcgtt
gatgccagaacggaaggtgggaaattcaagagcatgctggacatgtgcgaacgggtaaac
ctgcgaaaggtgaccaagcgtgttctggagaatcttatcaaggccggagcactggactgc
tttgatgttccccgcgctgcgcttttggatgccttggaacgtgttgttgccattgcccag
aaaaaggccaaagacaaaaattctggccagatgtcactcatggcgatgtccggcatggag
atgccttccttccccggaacagggctgaataccgatggccccacggttgaagaatgggaa
gatgatgaaaagcttcagtttgaaaaagaggcccttggcttctatctttccagccatccg
cttctctctttccggcacgagctggctcgcatgaagcttccgactcttttgcaggttgct
gactatggcggcggcgcagaggttcgggttgcctgcatggtgacaggtcgcaaggaacac
atcacccagaagggcgggaagatggcgttctgcgacatcgaagacctcacaggcgttggc
gaagccgtcatgttcccggaaacctacgcgaaaagccgtgagattctggaacaggatcag
ccccttttgcttatcggtaaggtgagtgaccgtgatggtgggccaaacgatgatgaaggt
gctccgaaaaaagccaagctcattgcagatgagattaagattcttggcggtgcgctggcc
ggaaacgaagaacctgtcctgctcatcaagggtgaagatgatctgaccgaaggtggacgg
cgtcgactcaaggatgtattggctcgccataccggcggggttcgcgtgcagcttttgctg
cgaatggacgaggtcgaatgcaagatgcagcttggaccaaagtacagcgtttccccgaca
aaagaattttggaaagacattgaatccctgtag
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