Desulfobaculum bizertense: LWC08_09800
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Entry
LWC08_09800 CDS
T07819
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pbiz
Desulfobaculum bizertense
Pathway
pbiz03420
Nucleotide excision repair
pbiz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LWC08_09800
03430 Mismatch repair
LWC08_09800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbiz03400
]
LWC08_09800
Enzymes [BR:
pbiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LWC08_09800
DNA repair and recombination proteins [BR:
pbiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LWC08_09800
MMR (mismatch excision repair)
Other MMR factors
LWC08_09800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
ResIII
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UIJ39469
LinkDB
All DBs
Position
2112568..2114703
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AA seq
711 aa
AA seq
DB search
MIDFEKELNPAQLEAVQTLDGPVLVIAGAGSGKTRTVVYRMANIVQQGHSPNSILLLTFT
KKAAQEMLNRAAMLLGEQGLYGVTGGTFHSFAYAWLRRYADLLGPGTGLTVMDQSDAESI
VKDIRTDLKIAKGDRTFPRRSTMLSLISKSRNKERALGDILREEAFHLTKYEEDFERIAK
HYEMFKQKHALLDYDDLLFGLERLLTQHPEVLETMRSRYRFIMVDEYQDTNLVQGRLVRL
IAGDTGNIMAVGDDAQSIYAFRGANVHNILDFPNQFPGTKIIRLEQNYRSAQPVLDLTNA
ILEQAQLKFRKNLFSERKHGPTPQLIRTMSDRSQANAVVKKVLELEHKYPLHEIAVLFRA
GYHSYPIEVALNKLGIKFQKFGGLKFTEAAHIKDALAYLRLTQNPADIPSWQRLLGYIKG
IGPKTVIKIYTAIMTANEKYLVNAKRKTPELAETLDFLESMRSLGGTPAAMLARVNEFYE
PILEKKYPDDFPRRKNGLDQLQRIASQYDDLESFLGDISLDQPEEDDRHKDNTLVLSTVH
SSKGLEWSAVLIIDLVQDRFPSRHAINSAEELEEERRLLYVACTRAKDYLGLFVPSSVYN
QYSHVSEPALESPFLAELPLSTFEAWKENFSGALVASKAKDPKPRIKAASAFKKAAEQTA
GPASSKKLGHCRHKIFGRGKIIASLTGNKYRINFPGFGLKVILGDYLKFED
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgattgattttgaaaaagaactgaatccagctcagcttgaagccgtccagactctggat
ggtcccgttttggtcattgcaggcgcaggttcaggcaagacccgaaccgttgtgtaccgc
atggccaacatcgttcagcaggggcactccccgaacagcatcctcctcctgacctttacc
aaaaaggccgcgcaggaaatgctgaatcgtgcggccatgcttcttggtgaacaggggctg
tatggcgtcacaggtggaacctttcactcttttgcctacgcatggctacgacgctatgcc
gacctgctggggccgggaaccggactcaccgttatggaccagtccgatgctgaaagcatt
gtcaaagacatccgtaccgacctcaaaattgccaagggagaccggacatttccccgtcgc
agcaccatgctctcgctcatcagcaaaagccgaaacaaagagcgggcactgggcgacatc
ctgcgggaagaagccttccacctcacaaaatatgaagaagattttgaacggattgccaag
cactatgaaatgttcaaacaaaagcatgccctgctcgactacgacgacctgctctttggc
cttgaacgactgctgacccagcaccccgaagtgctggaaaccatgcggagccgctaccgc
ttcatcatggtggatgagtatcaggacaccaacctcgtgcaggggcgccttgtccggctc
atcgcaggcgacaccggaaacattatggcggtgggtgacgatgcccagtccatctatgcg
ttccgcggtgccaacgtgcacaatattctggactttccgaatcagttccccggcacaaaa
atcattcgccttgagcaaaactatcgctcagcacagcccgtccttgaccttaccaatgcc
attttggaacaggctcagctcaaattcaggaaaaacctgttctctgaacgaaagcatggc
ccaacgccccagctcatccgcaccatgtctgaccgttcgcaggccaatgccgttgtcaaa
aaagtacttgagcttgagcacaagtacccgctgcacgaaatcgcagttctcttccgcgcg
ggctatcactcctaccctattgaggttgcgctcaataaactgggcatcaagtttcagaag
tttggtggactgaaattcaccgaagcggcacacatcaaggatgcgctggcctacctgcgc
ctgactcagaacccggcagacattccctcatggcagcgcctgctcggctatataaaaggt
attggacccaaaacggtcatcaagatttacaccgccatcatgacggccaatgaaaaatac
ctcgtcaatgccaagcgcaagacgccagagctggcagagacactggattttctggaaagc
atgcgctctcttggaggaaccccggcggccatgctggcccgggttaacgaattttatgag
cctattctcgaaaagaagtatccagacgactttccccggcgaaaaaacggtctggaccag
ctccagcgcatcgccagccagtatgatgatctggaatcttttcttggtgacatcagtctt
gaccagccagaagaagacgaccggcacaaagacaacacccttgttttatccacggtgcac
tcctcaaaaggccttgagtggtcagctgttctcattattgatcttgttcaggaccgtttc
ccgtccagacacgccatcaactccgccgaagagctggaagaagagcgccgcctgctctac
gtcgcctgcaccagagccaaggactatctcggactttttgtcccatcctcggtgtacaac
cagtacagccacgtcagtgagcctgctctggaaagtccattccttgcggaactgccgctg
agcacctttgaagcatggaaagaaaatttctctggagcacttgttgcctccaaagccaaa
gatcccaaacccagaatcaaggctgccagcgcctttaaaaaggccgcagaacagaccgca
gggccagcttcttcaaaaaaactgggccactgccgacacaaaatctttggccgcggaaaa
atcatcgccagtctgactggcaacaagtaccgaatcaatttccccggttttggcttaaag
gttatccttggagattatctcaaatttgaagactag
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