Desulfobaculum bizertense: LWC08_11450
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Entry
LWC08_11450 CDS
T07819
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pbiz
Desulfobaculum bizertense
Brite
KEGG Orthology (KO) [BR:
pbiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbiz03032
]
LWC08_11450 (topA)
03400 DNA repair and recombination proteins [BR:
pbiz03400
]
LWC08_11450 (topA)
Enzymes [BR:
pbiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LWC08_11450 (topA)
DNA replication proteins [BR:
pbiz03032
]
Prokaryotic type
DNA Topoisomerases
LWC08_11450 (topA)
DNA repair and recombination proteins [BR:
pbiz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LWC08_11450 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Lar_restr_allev
Zn_ribbon_recom
Zn_ribbon_RPB9
Ribosomal_L2
zf_C2H2_13
Auto_anti-p27
DUF1272
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
UIJ37328
LinkDB
All DBs
Position
complement(2491704..2493962)
Genome browser
AA seq
752 aa
AA seq
DB search
MSKNLIIVESPAKVKTIKKFLGRKFAVEASVGHVRDLPSKKLGVDDESFQPEYITIPGKE
KVVKKLTTAAAKADTIYLAPDPDREGEAIAWHVATILKDTNRNADIHRIQFNEITSRAVK
EALEHPRELDENLFNSQQARRVLDRLVGYKVSPLLWKKVKRGISAGRVQSVALRLVVDRE
KERRAFVPEEYWVLKAKFLGENPPAFDADLWKIKGKTAKVGSGEEAAAIEKTCKENPFVV
ESVTEKERKRSPLPPFITSTLQQEANRRLGYSAKRTMSIAQRLYEGVDLGERGTTALITY
MRTDSVRIANDARDAAKDFVLENFGEDFYPPKPRYFKTKASAQDAHEAIRPVDVTITPES
LQALLPSEQYRLYKLIWERFLASQMAVARFWDTTVITRVQDVQWRSRGERLLFPGYLKVY
SIAGGLGDSELPKLEEGQEIKLEKFSKEQKFTQPPARYTEASLVKELEEKGIGRPSTYAA
IISTLLAREYVQLTNKHFICTDLGVVVSDLLSEHFKTLMDVSFTANMEESLDAVAMGDKD
WIRLMKDFTSDFYPTLEEARENMKRVKTGLETDIVCEQCGKPMVIKFGKAGTFLACSGYP
ACSNTKNFVRNEQGEIEIVEKVKTEAEKIGRKCPECGGELVLKHARTGSRFIACDNYPDC
TYTEPFSTGIPCPKCGEGELVEKSSRRGKLFFSCSRYPDCDYAQWNPPVAEKCPECGFPI
LERKKTRAKGEHLACPNKKCKYTRSLEEESEE
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaatcttattatcgtcgagtccccggcaaaggtgaaaaccattaaaaagttt
ctcggcagaaaatttgccgtagaagcaagtgtcgggcacgtgcgcgacttgccaagcaaa
aagctcggagtggatgatgaatcttttcagcctgaatatatcacaattccgggcaaggaa
aaggtcgtcaaaaagcttaccactgccgctgcaaaagcagataccatttacctcgcacct
gacccggaccgcgagggagaggctattgcatggcatgtggccacgatccttaaagatacc
aatcggaatgcggatattcaccgcattcagtttaacgaaattacttcccgcgcggtcaag
gaagcccttgagcatcctcgcgagctggatgaaaacctttttaactcgcagcaggcgcgt
cgcgttttggaccgtcttgtgggctacaaggtttctcctctgctctggaaaaaggtcaag
cgcggtatttctgccggacgcgtgcagtctgtagctctgcgtttggttgttgatcgcgaa
aaagaacgccgtgcctttgtgccggaagagtactgggtgctcaaggcgaagttcttgggg
gaaaatccgccagcatttgatgcggacctctggaagatcaagggcaagactgcaaaagtt
ggttctggcgaagaagccgctgcaatcgaaaagacctgcaaagagaatccctttgtggtt
gagtcggttaccgagaaggagcgcaagcgttcccctctgccgccgttcattacctccact
ctccagcaggaagcgaaccgtcgtcttggctactctgccaagcgtacgatgagtattgcc
cagcgtttgtatgaaggtgtcgatcttggcgagcggggcacaaccgcgctcattacatat
atgcgtactgactctgtgcgtattgccaacgacgcccgcgatgcagcaaaggactttgtg
cttgagaactttggtgaagatttttatccgccgaagcctcgatatttcaaaaccaaggcc
tctgcgcaggatgcgcacgaagccattcgtcccgttgacgtcacgattactcccgagagc
cttcaggcgcttttgccgtctgagcagtaccgtctgtacaagctcatttgggagcgtttt
cttgcttcgcagatggctgtggcccgattctgggacactacggttatcacccgcgtgcag
gatgttcagtggcgttccagaggcgaacgtctgctcttccccgggtatctgaaagtttac
agcattgccggcggacttggagacagtgagttgccaaagcttgaggaaggccaggagatc
aagctggagaaattcagtaaagagcagaagtttactcagcctccggcgcggtacactgaa
gcctctctggtcaaggagctggaagaaaagggtattggtcgtccgtcgacctatgccgcc
attatctccacgcttctcgcccgtgagtatgtgcagctgaccaacaagcatttcatttgc
accgaccttggcgttgttgtcagtgatctgctgtcggagcattttaagacgcttatggat
gtgagcttcaccgcgaacatggaagagtctcttgatgctgtggcaatgggtgacaaggac
tggattcgtctgatgaaggacttcacgtctgatttttatccgacgcttgaagaagctcgc
gagaacatgaagcgcgtcaagactggtcttgagacggacatcgtttgcgagcagtgcggc
aagccaatggttatcaagtttggcaaggctggcactttcctcgcctgttccgggtatccc
gcgtgcagcaacaccaagaattttgtccgcaatgagcagggcgaaatcgaaatcgttgag
aaggtcaagactgaagccgagaagatcgggcgcaagtgcccagagtgcggtggcgagctt
gttctcaagcatgcccgtacaggcagccgtttcattgcctgcgacaattatcccgactgc
acctacaccgaaccgttctcaacaggtattccctgtcccaagtgcggcgaaggtgagctg
gtcgagaagtcctcgcggcgcggcaagctcttcttctcgtgcagccggtatcctgactgc
gactatgcgcagtggaatccgcccgtggctgagaagtgcccagagtgcgggttccccatc
cttgagcgcaagaaaacccgcgccaagggtgagcatctcgcctgcccaaacaagaaatgc
aagtacactcgctctctcgaagaggaaagcgaggagtag
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