Desulfobaculum bizertense: LWC08_12125
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Entry
LWC08_12125 CDS
T07819
Name
(GenBank) HD domain-containing protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pbiz
Desulfobaculum bizertense
Pathway
pbiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LWC08_12125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbiz03019
]
LWC08_12125
Enzymes [BR:
pbiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LWC08_12125
Messenger RNA biogenesis [BR:
pbiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LWC08_12125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
PolyA_pol_RNAbd
tRNA_NucTran2_2
CNV-Replicase_N
Motif
Other DBs
NCBI-ProteinID:
UIJ37455
LinkDB
All DBs
Position
complement(2654261..2655592)
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AA seq
443 aa
AA seq
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MDKTYRDAVSICKTIMRNGFEAYVINARLQRELIAETGEAELDIATDMDPEGLDKIFPEL
TLSENSRFLGKLSEGGVLYRFYPLEAEDSAYPEEYVARLTPRLLKRLGDKGELPPNIACP
YTPGIKDRYAGFVDIEQGLVKFSGNADLTLKQDYLRGIRALRFSANYNLPIEHNTWIAIV
RGARRILDYVSIADIMDEWRRVEAENMYEFVRLLFDCQILHGLLPEIAALSRVTQLLNRE
ADQEESVFEHTLKLMRHYPEQNPFDWKGTIACLFHDVGKLYTAEYFAGNWHFHQHHQVGA
QVTRKILHRLRFTPEDTDLICHLVRHHMRFSSMLTDKGIRRFRALPEHLRLIEMERANVK
ARKGNYTDFNHNLKMMERTELPEEMLEPLLNGNEIMEFTNLNPGPAVGLIRDALLNAQVS
GDVSSVPEAVEFVLGYKENSTKE
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaacgtacagagatgccgtcagcatttgcaagaccattatgcgaaacggcttc
gaggcatatgttatcaacgctcggcttcagcgggaactcattgcagagaccggtgaagcc
gagcttgatattgcaaccgacatggacccggaaggcctcgacaaaattttcccggaactc
acactttcagaaaacagccgcttcctcgggaaactgagtgaaggcggcgtgctgtacagg
ttctaccctctcgaagcagaagactctgcctaccccgaagagtatgttgcccgactcact
ccccgccttctcaagcggcttggcgacaagggcgaactccctccaaacattgcctgccca
tacactcccggcatcaaggaccgctacgcgggctttgtcgacatcgagcaaggcctcgtc
aaattttccggcaatgcagacctgaccctcaagcaggactatcttcgcggcattcgtgcc
cttcgtttttcggccaactacaatcttcccattgagcacaatacatggattgccatagtt
cgcggtgcccgccgcattttggactacgtttccattgcggacatcatggacgagtggcga
cgggttgaagccgaaaacatgtatgaatttgtgcgccttctctttgactgtcagattctt
catggcctgcttccagaaattgccgccctctcccgcgtcacccagctcctgaaccgggaa
gcagaccaggaggaaagtgtctttgagcacacgctcaagcttatgcggcactatccagaa
caaaatccatttgactggaaaggcaccattgcctgtctgttccacgacgtcggcaagctc
tacacagcggagtatttcgccgggaactggcatttccaccagcatcatcaggtcggcgcg
caggtcacccgcaagatacttcaccgtctgcgtttcacccccgaagacaccgacctcatt
tgccatcttgtccgccatcacatgcgtttctcttccatgctcacagacaagggcattcgc
cgcttccgtgccctgccagaacatcttcgcctcattgaaatggaacgcgccaacgttaag
gcccgcaaaggcaactacacggactttaatcacaatctcaaaatgatggaacgaacagag
cttcccgaagaaatgcttgagccacttctcaacggcaacgaaattatggagttcaccaac
ctgaaccccggtcctgcggtaggactgattcgagacgccctgctcaatgcacaagtttcc
ggagacgtcagttctgtgcccgaagctgttgaatttgtcctgggatacaaggaaaacagc
acaaaagagtag
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