Desulfobaculum bizertense: LWC08_12310
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Entry
LWC08_12310 CDS
T07819
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbiz
Desulfobaculum bizertense
Pathway
pbiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LWC08_12310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbiz03019
]
LWC08_12310
03009 Ribosome biogenesis [BR:
pbiz03009
]
LWC08_12310
Enzymes [BR:
pbiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LWC08_12310
Messenger RNA biogenesis [BR:
pbiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LWC08_12310
Ribosome biogenesis [BR:
pbiz03009
]
Prokaryotic type
rRNA helicases
LWC08_12310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
UIJ37489
LinkDB
All DBs
Position
2698106..2701132
Genome browser
AA seq
1008 aa
AA seq
DB search
MGNVRSNNISQEDHRSVLSGAPRLRDDDNVYEETCFMSETSSIFGIGPVKRGASKKNDKK
KESPKKKEERSSSKNEQKEQAEKVEQKKKTSAKRRRPSRPAAEAADSADAESRPQRRRPQ
RRRRKNVKDPETIQAQTAEKRKKAQEKAEAEEKSEASRPAKAAKKDGESAKTRGRAKTNR
RTAKSSSPSPQKPSQPKKSLSKGPHAGEGLDEGVAHYDPAALGLNFDDDTQDEQEERESK
TRRPRRRRSRKTAPAAEGAQFAEQREAAQQTDEEKPKKKRTRRSPRRSKKEQERRAEARV
AQDAGVQDAPESQSEDSRESSEPVLNEQKSLAAGEREEQAVLESQPVPALEEESTASEEA
APFETSLERSFDQMAEAAETVGAEPKAEAPVEPEVSTGEDSQDAAAESAPEEHAEAPQSD
AVSEEEAAPEAPAAEKAPAPEKEHSHEVKEVPEDEALPELSFEELPEDLREACLRAGWTT
LMPVQAKAIPYLLAGRDLMIQSRTGSGKTGCFALPIMQRIEIERAECQALVLVPTRELAQ
QVAEQFEQLFGETGARVVAVFGGSSYKAQIDSFRKGAHVVVGTPGRVLDHLLRGSLNLKG
IDTLVFDEADRMLSIGFYPDMKEVQSFLPRRDISMLMTSATYPPHVLRLAGEFMDRPQIL
SLSSEQVHLTETPHVYYSCPAMQKDRALVRIIELENPATGFIFCNTKQHVHYLTTVLQRF
GYDADELSGDLTQSKRERVLTRMRSGNLRFLVTTDVAARGIDIPDISHVFMYEPPEDHEV
YIHRAGRTGRAGASGMVISLVDVMERLALGRIAKTYGINLEQHELPTDEDLALEVGNRVT
AMLEARFRELDNVKQERLRRFEPLVDSLSKHEDLVPLMAMLLDELYQESLHGTPALPQVE
QEEATPQPESRRSSQGGQQKRRSSGNSRRRKRRPESSGQDQRQRHDGRRKPQGEKSSDDR
SDQRKDQRSDSRKDQRRERSGDRRQNADGAKRRRPRRRRKKKPETPQN
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
gtgggaaacgttcggtcaaacaatatttcgcaggaagaccacagaagtgtactgtctggt
gctccacggcttcgcgatgacgacaacgtctacgaggaaacgtgtttcatgagtgagacc
tcaagcatttttggaattggcccggtaaagcgcggcgcttccaaaaaaaacgacaagaaa
aaagaatctcccaagaagaaagaggagcgatcctcttccaagaatgagcagaaggaacag
gccgaaaaggtagagcagaagaaaaagacttctgcaaagcgccgccgtccatctcgcccc
gccgcagaagctgctgactccgcagatgccgagtcccgcccccagcgccgtcgcccccag
cgtcgccgccgcaaaaatgtgaaagatcctgaaaccattcaggcccagacagcagaaaag
cggaaaaaagcgcaggaaaaggctgaggctgaggaaaagtccgaggcatcgcgtcctgca
aaggccgccaagaaggacggcgaaagcgccaagacccgaggccgggccaagacgaaccgc
cggacggcaaaaagcagctctccttctccgcagaagccaagccagcccaagaagagcctg
agcaaaggaccgcatgcaggcgaaggccttgatgaaggcgttgcccattatgatcctgct
gctcttggtttaaattttgatgatgacacgcaggatgagcaggaagagcgcgaatccaaa
acgcgtcgcccgcgtcgtcgccgttctcgcaagactgctcccgccgcagaaggcgcccag
ttcgcagaacagcgcgaagccgctcagcagactgacgaagaaaagcctaagaaaaagcgc
acccgccgttctccgcgcaggagtaaaaaagagcaggaacgccgtgctgaagctcgcgta
gcacaggacgcaggcgttcaggacgctcctgaatcgcagtctgaagattctcgggaaagc
tctgagccagttctgaatgagcagaagagtcttgctgctggtgaacgtgaagagcaggcc
gttctggaaagccagcccgtgcccgcactcgaagaggaaagcaccgcttctgaagaagca
gctccttttgagacgagccttgagcggagttttgaccagatggctgaagctgctgagact
gtgggtgctgagccgaaagctgaggctccggttgagccagaagtttcgacaggtgaagat
tctcaggacgcagcagctgagtctgctccagaagagcacgcagaagcaccgcagagcgac
gctgtttcagaagaagaggcagctccagaggctccggccgctgagaaagctcccgctcca
gaaaaagagcattcgcacgaagtcaaggaagtgcccgaagatgaagctctgcctgagctg
agttttgaagagcttcccgaagacctgcgcgaagcctgcctgcgtgctggctggacaacc
ctgatgcccgttcaggccaaggctattccgtatcttttggctggtcgtgacctgatgatt
cagtctcgaacaggaagcggcaagactggctgctttgccctgccgatcatgcagcgtatc
gagattgaacgcgctgagtgccaggctctggtgctggttcctacgcgtgaacttgcccag
caggttgccgagcagtttgaacagctttttggcgagactggtgctcgtgttgtggccgtc
tttggtggctccagctacaaggcgcagattgattctttccgcaaaggcgcacacgttgtg
gtgggaacacccggccgtgtcctcgatcacctgctgcgtggctctctgaacctcaagggc
attgatacgctggtctttgatgaagctgaccggatgctgtccattggcttctacccagac
atgaaggaagtgcagagtttcctgccccgtcgggacatcagcatgctcatgacgtccgcc
acctatccgccgcatgtgctgcgtttggctggtgagttcatggatcgtccgcagattctg
tcgctgtccagcgagcaggttcacctgacggaaacgccacatgtctattacagctgcccg
gccatgcaaaaagatcgtgcccttgtgcgcatcattgagctggagaatccggcaactggt
tttattttctgtaacaccaagcagcacgtccactacctgactacggtgctccagcgcttt
ggttatgatgcggacgaactctctggtgacctgacgcagtccaagcgcgagcgggtgctg
acccgtatgcgcagtggcaatcttcgtttcctcgtgaccacagacgtggccgcacgaggc
atcgacattcccgacatctcgcacgtgtttatgtacgagccgccggaagaccatgaagtc
tatattcaccgcgcaggccgcactggccgagctggtgcatctggcatggtcatttctctg
gtcgacgtcatggagcgtctggcccttggccgtattgccaaaacctatggcatcaacctt
gagcagcacgagctgcccacggatgaagatctggctcttgaggttggcaaccgtgtgaca
gccatgctggaagcccgtttccgcgagctggataacgtgaagcaggaacgcctgcgccgc
tttgagccgcttgtggattccctgagcaagcacgaagaccttgtgccgcttatggccatg
cttttggacgagctgtatcaggaatccctgcacggtactccggccctgccgcaggtcgag
caggaagaggctacgcctcagcctgagtcccgccgctcttcacagggcggacagcagaag
cgccgttcttctggaaattcccgtcgccgcaagcgccgccctgagtcctctggtcaggac
cagcgtcagcgccatgatggtcgccgcaagccgcagggtgaaaagtcctctgatgatcgt
tcagatcagcggaaagatcagcgttctgattcgcggaaagaccagcgtcgggagcgttcc
ggtgatcgccgccagaatgcggacggtgcaaagcgccgccgtcctcgccgccgtcgcaaa
aagaagcctgagactcctcagaactaa
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