Desulfobaculum bizertense: LWC08_14590
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Entry
LWC08_14590 CDS
T07819
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbiz
Desulfobaculum bizertense
Pathway
pbiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LWC08_14590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbiz03019
]
LWC08_14590
03009 Ribosome biogenesis [BR:
pbiz03009
]
LWC08_14590
Enzymes [BR:
pbiz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LWC08_14590
Messenger RNA biogenesis [BR:
pbiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LWC08_14590
Ribosome biogenesis [BR:
pbiz03009
]
Prokaryotic type
rRNA processing factors
LWC08_14590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
UPF0547
Motif
Other DBs
NCBI-ProteinID:
UIJ37903
LinkDB
All DBs
Position
complement(3195401..3196879)
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AA seq
492 aa
AA seq
DB search
MADSKVMNISVLAEERIEMGIVQNGVLEEYYVELFNQKKTRGNIYVGVVNNIDTSLQAAF
INYGAERNGFLQIDEIHPEYFHVQQSESSGRPRFPPIQNVMRKGDLVLVQVVKEPTGKKG
AFLTTYLSFPGRYFVLTIGREQIGISRKITDENVRKDLRELVQKQDLGTGLGVIVRTAAA
SASKTRLIRDLKILKKLWTNARDSAQKSTPPSQLFAEIDLSGRAIRDYMDNDITEVYVDH
EETIERVRELMQIIAPRRLNRLKYYNLREQGKSWWESNHVDKQVQALYSREVTLPSGGRL
VFDTTEALTAVDINSGKIGGKTNFRDMALLTNIEAAREIARQIRLRDIGGQIVIDFIEMK
DKSHCREVERTMRLEVKKDRARTDVGRLSRFGLLELVRQRLGSSALSTSTESCPHCGGTG
VRRNLEWQAVNAIRELYAKIWAHTPTQGAPNPTVLNYECHPDIMHYLLNNKLSKLHNMET
EHNVKFSFIPKV
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcagactccaaggtaatgaacatcagtgttctggccgaggaacgcatcgaaatgggc
attgtccaaaacggtgtgctcgaagaatattacgtcgaactgtttaatcagaaaaagacc
cgcggcaacatttacgtcggcgtggtcaacaacatcgacaccagcctccaggctgcattc
atcaactacggcgccgagcgaaacggctttttgcagattgatgaaatccaccccgaatat
ttccacgtccagcagtccgaatcttccggacgcccccgctttccaccgattcagaacgtt
atgcgcaaaggcgacctcgtcctcgtgcaggtcgtcaaggaacccacaggaaaaaaaggt
gcattcctgaccacctatctttccttcccgggccgctacttcgtgctgaccatcggtcgt
gaacagattggcatctcccgcaagatcactgacgaaaacgtcagaaaagacctgcgggaa
ctcgtccagaaacaggatctcggcaccggccttggcgtgattgtgcgtaccgcagcagca
agcgccagcaaaacccgccttatccgcgatctgaagattctgaaaaagctctggaccaac
gcccgcgactctgcgcaaaaatccacccccccctctcagctctttgcagagatcgacctc
tccggccgtgccatccgtgattacatggataacgacatcaccgaggtctacgttgaccac
gaagagaccattgaacgcgttcgcgagctgatgcagattattgctccccgccgcctcaat
cgcctaaaatattacaatctccgtgagcagggtaaatcctggtgggaaagcaaccacgtt
gacaagcaggtgcaggcactttacagccgtgaagttaccctgccctctggtggccgcctt
gtctttgataccacagaggcgctgaccgctgtggacatcaactctggcaagatcggtggc
aaaacaaatttccgcgacatggcacttttgaccaacatcgaagctgcccgcgaaattgcc
cgacagattcgcctccgcgacatcggcgggcagatcgtgattgacttcatcgaaatgaag
gacaaatcccattgtcgcgaagtggaacgtaccatgcgccttgaggtcaaaaaagaccgc
gcacgcacggacgttgggcgtctgtcccgctttggcctgctcgaactcgttcgtcagcgc
cttggctcttccgccctgtccaccagcaccgagagctgtccgcactgcggcggcactggc
gtccggagaaatctggaatggcaggccgtcaatgcaatccgagagctgtatgcaaagatc
tgggcgcacacccccacgcagggagcgccaaatccgacagtgctcaattatgaatgtcat
cccgacattatgcactatttgctgaacaacaagttgagcaagctccacaacatggagaca
gagcacaacgtgaagttcagctttatcccaaaagtctga
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