Paenibacillus beijingensis: VN24_00450
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Entry
VN24_00450 CDS
T03802
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbj
Paenibacillus beijingensis
Pathway
pbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VN24_00450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbj03019
]
VN24_00450
03009 Ribosome biogenesis [BR:
pbj03009
]
VN24_00450
Enzymes [BR:
pbj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VN24_00450
Messenger RNA biogenesis [BR:
pbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VN24_00450
Ribosome biogenesis [BR:
pbj03009
]
Prokaryotic type
rRNA helicases
VN24_00450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
AJY73376
UniProt:
A0A0D5NDR5
LinkDB
All DBs
Position
complement(88222..89799)
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AA seq
525 aa
AA seq
DB search
MKTFAEFGLEPKVLQAITELGFEESTPIQSKSIPVAMTGSDLIGQAQTGTGKTAAFGIPL
INKIPINEDRIVALIMTPTRELAIQVSEEIGKLSRFKGTRSLPIYGGQEIGRQIRALKKR
PQIIIGTPGRLLDHINRKTIKLDDVQTVVLDEADEMLDMGFMDDIQSILSLVPEERQTML
FSATMPPNIQKLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEVHERQKFDALSRLLDMESP
ELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVA
ARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREIDHLHFIEKVTR
HKIARKPLPSISEAIEGKQRVTAERILEIVQGDEFQEYKGIAIQLLEQYDSVHLLAAAIK
LITGEKKDVNIELTPEDPIRAKKRRPDVRSNGRRFSGGTFSGGNRGGGYRGGRSDGRGGY
GSRGGYGSRDGYKGRSGEGRGGEGRGGYDSGRGEARRPKPSSADE
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttgctgaatttggcctggaacctaaagtactgcaggcaattacagaattg
ggctttgaggaatcgaccccaatccaatcgaaatcgatcccggttgcgatgaccggcagc
gatttaatcggtcaagcacagacaggaacagggaaaaccgcggcgttcggaattcccctt
attaacaaaattccgataaatgaagaccgtatcgtggcgcttattatgacgccgacgcgc
gagcttgccattcaagtatcggaagaaatcgggaagctttcccgatttaaaggaacccgc
tctctgccgatttacggcggacaggaaatcggccgtcaaatccgtgccctgaaaaagcgt
ccgcagatcattatcggcaccccgggccgtttgctcgaccatattaaccgcaaaacgatt
aaactcgacgacgtgcaaacggttgttctggacgaagcggacgaaatgctggacatgggc
tttatggatgatatccaaagcattctgagcctcgttccggaagagcgtcaaacgatgctg
ttctcggcaacaatgcctccgaacattcaaaaacttgcccagcagtttctgaaaaatccg
gaacatgtgtccgttatcccgaaacaagtgagcgcgcctctcatcgatcaggcttacatt
gaagttcatgaacgccaaaaattcgatgcgctcagccgtcttttggatatggaatcgccg
gagctggccattattttcggccgcaccaagcgccgggtcgacgaactgagcgaagcgctg
cagaaacgcggctattccgcagacggattgcatggcgacctgtcgcagaaccagcgcgac
aacgtgatgcgcaagttccgcgacggcagcatcgacgttctcgttgcaactgacgtggcg
gcgcgtggtcttgacgtttccggcgtatcgcacgttgtcaactttgaccttccgcaggat
ccggaaagctacgttcaccggatcggccgtaccggccgtgcaggtaaagaaggtaccgca
tggtctttcgtgacgccgcgcgagatcgatcatttgcactttatcgaaaaagtaacgcgt
cacaaaattgcccgcaagccgcttccgagcatctccgaagcgattgaaggcaagcagcgc
gtgacggctgagcggattctggaaattgtccaaggcgacgaattccaggaatacaaaggc
atcgccattcagcttctcgagcaatacgattccgttcatcttcttgcggctgcgatcaag
ctgatcactggcgaaaagaaagatgtaaatatcgaattgacgcctgaagatccgattcgt
gcgaagaagcgcagaccggatgttcgctcgaacggacgccgtttctccggcggtacattc
agcggcggtaaccgcggcggcggctatcgcggcggtcgcagcgacggccgcggcgggtac
ggcagtcggggcggctacggcagccgcgatggctacaaaggccgcagcggtgaaggccgc
ggtggtgaaggccgcggcgggtacgactccggccgcggagaagcccgtcgtccgaaaccg
tcctctgccgacgaataa
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