Paenibacillus beijingensis: VN24_17365
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Entry
VN24_17365 CDS
T03802
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbj
Paenibacillus beijingensis
Pathway
pbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VN24_17365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbj03019
]
VN24_17365
03400 DNA repair and recombination proteins [BR:
pbj03400
]
VN24_17365
Enzymes [BR:
pbj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VN24_17365
Messenger RNA biogenesis [BR:
pbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VN24_17365
DNA repair and recombination proteins [BR:
pbj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VN24_17365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ANAPC4
Motif
Other DBs
NCBI-ProteinID:
AJY76001
UniProt:
A0A0D5NL56
LinkDB
All DBs
Position
3845980..3848184
Genome browser
AA seq
734 aa
AA seq
DB search
MLEKARELLKRVYGYDTFRPGQEDIIGGILDGSDTLAILPTGGGKSVCYQIPALTLTGTT
LVISPLISLMKDQVDSLLRLGVPAAYLNSSLGAAEYREVLRGAMDGEYKLLYVAPERLDA
PMFGTLSERMRIPLIAIDEAHCVSQWGHDFRPSYRQLAGWIGRMEDRPLVAAFTATATPE
VSRDIADMLALRRPRIYVTGFARPNLSLSVVSGTDKKAFLSRFLTERADQSGIIYAATRK
ETEAVHAELLRRGIPAGKYHGGLGDAERAEAQEKFRFDDYRVMVATNAFGMGIDKPNVRF
VLHWQVPGDLESYYQEAGRAGRDGEESECILLFEPQDLQVQRYLIEQGTGDDDRKAVQLS
KLYAMMNFGRTERCLQQFIVDYFGEKGVEPCGKCSNCLDKSERVDRTAEAQKALSCVGRM
KGKFGVTTVAKVLKGSRDKRVIQFGLDRLSTYGLLRNWPEKEIADWLYWLVAEGYLKMSE
GAYPTVSLTAAALPVLEGKTSVVRRQRTSVRRSAGAAAVHDTPLFEALRQWRKETAAAEG
VPPFMLFFDATLRELTDAKPLTQDALLRVKGIGAAKADKYGPDLLRIIAEHSSGAGRGVG
AEAERLVSGAGAAAVKAEASRRIRPDAVISGGEPGDKQESFLISYALFCEGRTAEDIAAE
RGLSKVTVEGHLIRSAGEGHPLDWSRIIPEEQEQPILEAVRRLGADKLRPIKDELPEDVS
YFAIHGVICKYGLK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgctggagaaggcgcgggagctgctgaagcgcgtatacggttacgacacgttccgtccg
gggcaggaagacattatcggcggcatcctggacgggagcgacacgcttgcgattttgccg
accggcggcggcaaatcggtctgctatcaaatacctgcgctgacgctgacgggaacgacg
cttgtcatttcgccgcttatttcgctgatgaaggaccaagtcgattcgctgctgcggcta
ggcgttccggccgcttatttgaacagctcgcttggcgcggcggaataccgggaggttctc
cggggtgcgatggacggggagtacaagctgctgtacgtggcgcccgagaggctcgatgcg
ccgatgttcggcacattgtccgagcggatgcgcattccgctcatcgccatcgacgaggcg
cactgcgtgtcgcagtggggtcacgatttccgcccaagctaccgccagcttgccggctgg
atcggccggatggaggatcgcccgctggtggcggcgtttaccgcgacggccacccctgaa
gtgtcccgcgacattgcggacatgcttgccctccgccggccgcggatttatgttacgggc
ttcgcccgtccgaatctgtcgctgtcggtcgtgagcggcacggacaaaaaagcgtttctg
agccggtttctgaccgagcgcgccgaccagtccggcatcatctatgccgcgacccgcaaa
gaaaccgaggcggttcacgccgagctgctgcgccggggcattccggcaggcaaatatcac
ggcgggctcggcgacgcggaacgggccgaagcgcaggagaagttccgctttgacgactac
cgggtcatggtggccaccaatgcgttcgggatgggcatcgacaagccgaacgtgcgcttt
gtgctgcactggcaagttccgggcgacctcgaatcgtattaccaggaagcggggcgcgcg
ggccgcgacggggaagagagcgaatgcatactgctgttcgagccgcaggacttgcaggtg
cagcgttatttgatcgagcaggggacgggcgatgatgaccggaaggccgtgcagctgtcc
aaactgtacgcgatgatgaatttcgggaggacggagagatgcctgcagcagttcatcgtc
gattatttcggagaaaaaggggtcgagccgtgcggcaaatgcagcaactgcctcgataag
agcgaacgcgtcgaccggacggcggaagcgcaaaaggcgcttagctgcgtcggccggatg
aaagggaaattcggcgttacgacggtagccaaagtgctgaaaggctcccgcgacaaacgg
gtgatccagttcggccttgaccgcctctccacatacggactgctgcgcaattggccggag
aaagaaattgccgactggctgtattggcttgtggcggaaggttatttaaagatgagcgaa
ggagcctacccgaccgtttcgctcaccgccgctgcgctgccggtgctggaaggaaagacg
agcgtcgtccggcgccagcggacgagcgtccgccgcagcgcgggagcggccgctgtccac
gatacgccgctgttcgaagcgctgcggcagtggcggaaggagacggcggccgcagaaggc
gtgccgccgttcatgctgttcttcgacgcgacgctgcgcgagctgaccgatgcgaagccg
ctgacccaggacgcgctgctgcgggtcaaaggaatcggcgccgccaaagcggataaatac
ggtcccgatctgctgcgcatcatcgcggagcatagcagtggggccgggcgcggcgtaggc
gcggaagcggagcgcttggtaagcggcgcgggagcagcggcggtaaaagcagaggcatcg
cgccgcataaggccggatgccgtcattagcggcggcgaacccggcgacaagcaggagagc
tttcttatctcttacgcccttttttgcgaaggccggaccgctgaagatatcgcggccgag
cgcggactgagcaaagtgacggtcgagggccatttaatccgcagcgcgggggaaggccat
ccgctcgattggagccggatcattcccgaagagcaggagcagcccatcctcgaggccgtc
cggcggctgggggcggacaagctgcggccgatcaaggacgagctcccggaagacgtaagt
tattttgcgatccatggcgtcatatgcaaatacgggttaaagtga
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