Paenibacillus beijingensis: VN24_19405
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Entry
VN24_19405 CDS
T03802
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pbj
Paenibacillus beijingensis
Pathway
pbj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VN24_19405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbj03021
]
VN24_19405
Transcription machinery [BR:
pbj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VN24_19405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_2
Sigma70_r4
Sigma70_r1_1
Exonuc_VII_L
DUF6627
Motif
Other DBs
NCBI-ProteinID:
AJY76336
UniProt:
A0A0D5NM53
LinkDB
All DBs
Position
4307783..4308907
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AA seq
374 aa
AA seq
DB search
MANDQHTELDTEQKLELVKEQLVEQGKKRSSLSYKEIMDKLAPFDQDPEQIDEFFEQLDD
LGIEVTNERDDDLPNMGGDREREHDEFNFDDDLALPPGIKINDPVRMYLKEIGRVPLLSA
DDEVELAKRIEKGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK
FDHTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREP
TPEEIAAEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYE
LLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL
RHPSRSKRLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcagcatactgaactagataccgaacaaaagttggagcttgtcaaagag
cagctagtcgaacaggggaagaagaggtcgtccctgtcttataaagagatcatggacaaa
ctggcgccattcgatcaagaccccgagcagattgacgagttcttcgaacagcttgacgat
ttgggtattgaagtaacgaacgaacgcgacgacgatctgccgaacatgggcggagaccgt
gaacgcgagcacgatgagttcaatttcgacgatgacctggctctgccgccgggaattaaa
atcaacgaccctgtccggatgtacttgaaagaaatcgggagggtgccgcttctttctgcg
gatgatgaagtggagctggccaaacggattgagaaaggcgacgaggaagcgaagcgccgt
cttgccgaagcgaaccttcgtctcgttgtcagcattgccaaacgttacgtcggccgggga
atgctgttcctggatttgatccaggaaggaaatatgggcctgatcaaggcggttgagaaa
ttcgaccatacgaaaggctataagttcagtacgtatgcgacatggtggatccgtcaggcg
attacgcgcgcaatcgcagaccaggccagaacgatccggattccggttcatatggttgaa
acgatcaacaagctgatccgcgtctcgcgtcagctgctgcaggaactcggacgcgaacct
acgccggaagaaattgccgccgagatggagctgagcaccgataaagtccgtgaaattatg
aaaattgctcaggagccggtttcgcttgaaacgccgatcggggaagaagacgattcgcat
ctgggtgattttattgaagatcaggaggcgcttgcgcctgcggatgcggcggcttacgag
cttttgaaggaacagcttgaagatgtgctcgacacgctgaccgagcgggaagaaaacgtg
cttcgtcttcgtttcggacttgacgacggacgtacgcgcacattggaagaagtgggcaaa
gtattcggcgttacccgtgagcggattcgccagatcgaagccaaggcgcttcgcaagctt
cgtcacccgagccgcagcaagcggttgaaagattttctcgaataa
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