Paenibacillus beijingensis: VN24_25040
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Entry
VN24_25040 CDS
T03802
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pbj
Paenibacillus beijingensis
Pathway
pbj00300
Lysine biosynthesis
pbj00470
D-Amino acid metabolism
pbj01100
Metabolic pathways
pbj01110
Biosynthesis of secondary metabolites
pbj01120
Microbial metabolism in diverse environments
pbj01230
Biosynthesis of amino acids
Module
pbj_M00525
Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
pbj_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pbj00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
VN24_25040
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
VN24_25040
Enzymes [BR:
pbj01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
VN24_25040
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Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
tRNA_U5-meth_tr
Motif
Other DBs
NCBI-ProteinID:
AJY77221
UniProt:
A0A0D5NPN8
LinkDB
All DBs
Position
complement(5530787..5532136)
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AA seq
449 aa
AA seq
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MRGKWMYFHGTSKINDKGHLEIGGCDTTDLAREYGTPLYVVDEALVRQRAREYVEAFRAS
GLKFQVAYASKAFSVLAMCVIAEQEGLSLDVVSDGELYTALQAGFPAGRIHFHGNNKTPE
EINMALDAEIGCFVVDNFTELRLLNALAGDKGKKVNILLRITPGVEAHTHDYISTGQEDS
KFGFDLQGGAAFQAVEEATGLKHLHLLGVHSHIGSQIFEVEGFRMAADKVCGFALDVRAK
LNYTFQVINLGGGFGIRYTNDDTPLQVAEYIKAITDSVRTNFTKADYPLPEIWVEPGRSI
VGDAGTTLYTVGTSKDIPGVRKYVSVDGGMTDNPRPALYQSQYEAVLANRAGEPAAETVS
IAGKCCESGDMLIWDLELPQAKSGDLLAVFCTGAYNYAMASNYNRIRRPAVVFVRDGAAD
VAVKRETLSDIIAGDVIPERLRKSALTNG
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaggggaaaatggatgtattttcacggtactagtaaaatcaacgataaagggcatctg
gaaatcggaggctgcgatacgaccgatcttgcccgcgaatatggaacgccgctgtatgtt
gtggacgaggcgctcgtccgccagcgtgcacgggagtatgttgaggcatttcgcgcttcc
ggcctgaaatttcaggtggcctacgcgagcaaggcgttcagcgtgctggcgatgtgcgtc
atcgccgagcaggaagggctgtcgctcgacgtcgtatcggacggtgagctgtataccgct
ctgcaggccgggttcccggccgggcgcattcactttcacggcaacaataagacgccggaa
gaaattaatatggcgctcgatgcggagatcggctgcttcgtcgtcgacaatttcacggag
ctgcggctcttgaacgccctcgccggcgataaaggcaagaaagtgaacattttgctgcgc
attacgccgggggtggaggcgcatacgcacgattatatttcaaccgggcaggaagattcc
aaattcggcttcgatctgcagggcggggccgctttccaggcggtggaagaagcaaccggc
cttaagcatctccatctgcttggcgtgcattcccacatcggctcgcaaatattcgaagtc
gaaggcttccggatggccgcggacaaagtatgcggatttgcgcttgacgtacgtgcgaag
ctgaactacacgttccaggttatcaacctcggcggcggcttcggcatccggtatacgaat
gatgatacaccgctgcaagttgcggagtacatcaaagcgattaccgattctgtgcgcacc
aactttacgaaggcggactatccgcttccggaaatttgggtggagccgggccgcagcatc
gtaggcgatgccggaacgaccttgtatacggtcggcacaagcaaagatattcctggcgtg
cgcaaatacgtttccgtcgacggcggtatgacggacaatccgcgtccggcgttgtaccag
tcccaatacgaggcggtgcttgccaaccgcgcgggcgagccggctgccgagacggtctcc
attgcgggcaaatgctgcgaaagcggcgatatgctcatttgggatttggagcttccgcag
gcgaagagcggcgatctgctggccgtattttgtacaggcgcctataactatgcgatggca
agcaattataaccgcatccgccgcccggctgtcgtgttcgtccgggacggggccgctgac
gttgccgtcaagcgtgaaacgctgagcgacattatcgcgggcgacgtcattccggagcgt
cttcgcaagtcggcgctgacgaacggataa
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