Paenibacillus baekrokdamisoli: Back11_21930
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Entry
Back11_21930 CDS
T06671
Symbol
sigD
Name
(GenBank) RNA polymerase sigma-D factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
pbk
Paenibacillus baekrokdamisoli
Pathway
pbk02020
Two-component system
pbk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Back11_21930 (sigD)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Back11_21930 (sigD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbk03021
]
Back11_21930 (sigD)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pbk02035
]
Back11_21930 (sigD)
Transcription machinery [BR:
pbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Back11_21930 (sigD)
Bacterial motility proteins [BR:
pbk02035
]
Flagellar system
Flagellar assembly proteins
Stator
Back11_21930 (sigD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_38
HTH_16
LytR_cpsA_psr
Motif
Other DBs
NCBI-ProteinID:
BBH20848
UniProt:
A0A3G9JAB6
LinkDB
All DBs
Position
complement(2408076..2408861)
Genome browser
AA seq
261 aa
AA seq
DB search
MIEPKAPHLSNIEIWQKWKEEGDIEAKKRLIEQYLTLVDYVSNRMAIGLPKNVSKDDLAS
NGVMGLIDAIEKFDYRRGLQFETYASWRIRGAIIDGLRQGDWVPRSVREKAKKIEEAYQH
LEQQYLRSVTDAEISHYLEVSEKEFVHMLQEIAVTTVCSLEDPIREEESETRLSLLVDEK
AKNPDYKVHEFYLKESLVRGIERLTAKERTVVSLFYYDELSLSEIAEVMCLSPSRISQLH
SKAILRLRGALDKQKDQLMEH
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgattgagcccaaagcgcctcatttgtctaacatcgagatttggcaaaagtggaaagaa
gaaggagatattgaagccaagaaacgtcttattgaacagtatttgacgttggttgattac
gtaagtaacagaatggctattggtttgccaaaaaacgtctcaaaggatgacctcgctagc
aacggtgtaatgggtttaatcgatgccatcgagaaattcgattatagacgcggacttcaa
ttcgaaacctatgcatcatggcgaattcgaggcgctattattgatggtttacgtcaaggt
gactgggtgccgcgttcggttcgagagaaagcaaaaaaaatagaagaggcttatcagcat
ttggaacagcaatatcttcgttcggttactgatgctgagattagtcactatttagaggtt
agcgagaaagagtttgtacatatgctgcaagaaattgctgtgactaccgtgtgttcgctt
gaagatccgattcgagaagaagaatcggaaactcgcctatcactgctcgtagatgagaaa
gcgaagaatcccgactataaggtacatgagttctacttgaaggagtctttagttcgaggg
atcgaacgattgacagcgaaagagagaaccgtggtttctttattctattatgatgagctt
tcacttagtgagattgcggaagttatgtgtttgtcgccatcacgtatttcacagcttcat
tctaaggcgattttaagactgcgcggcgcacttgataagcaaaaggatcagttgatggag
cattga
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