Paenibacillus baekrokdamisoli: Back11_37790
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Entry
Back11_37790 CDS
T06671
Name
(GenBank) DEAD/DEAH box family ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbk
Paenibacillus baekrokdamisoli
Pathway
pbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Back11_37790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbk03019
]
Back11_37790
Enzymes [BR:
pbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Back11_37790
Messenger RNA biogenesis [BR:
pbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Back11_37790
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
HP0268
SUa-2TM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBH22434
UniProt:
A0A3G9JH56
LinkDB
All DBs
Position
complement(4235471..4236760)
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AA seq
429 aa
AA seq
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MTFNDLNLIPAILKALSKENYTTPTPIQEQAIPAVLAGKDLLGCAQTGTGKTAAFAVPIV
QLLSEQQMRPNTGRHIRSLILTPTRELALQIADNIQAYSQYTQLRCSAIVGGVSQRVQER
ALKQGADIIIATPGRLIDLINQKHIDLKHVKILVLDEADRMLDMGFIHDVKKIITKLPSK
RQTLFFSATMPPEISKMVKALLVNPVKVEITPVSSTVDRIKQSIYLVDKENKQKQLNHLL
QDKSIVSALVFTRTKHGADRVVRELTAVNIAAQAIHGNKSQNARQSALSNFRSGVTRVLV
ATDIAARGIDIEELSHVINMNLPNIPETYVHRIGRTGRAGMSGIAISFCEVDEIPYRRDI
EKLIGKTIPEVKDHPYPMMSRTQPVKADRPSISAVQKPQKPAKSKANPVRKPKSEWFKKG
SKAGSKTSR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaatgatttgaatcttatacccgctatcttaaaagctttaagcaaagagaac
tatactacgccgacccccatacaggaacaggcgattccagctgtgttagccggtaaagat
ttacttggctgtgctcaaactggaacagggaagacggctgcatttgctgtgccgattgtc
cagctattaagtgagcagcaaatgagaccgaatacggggcgccatattcgctcattgatt
ttaacaccgacaagagagcttgctcttcagattgctgataacattcaggcatatagtcaa
tacacccaattgcgttgttctgctatcgttggcggcgtttcgcaaagagtacaggagcgg
gcgctaaagcaaggtgcagatattattattgcaactccgggcagactcatcgatttaatc
aatcaaaagcatattgatttgaaacatgtcaaaatattagtactggatgaagctgacaga
atgctcgatatgggctttattcatgatgtgaagaagatcatcaccaaattgccaagcaaa
agacaaacgcttttcttctcggcaacgatgcccccagaaatatccaagatggtcaaagcg
ctgctcgttaatccagtgaaagtagagattactccggtgtcttctactgtggatcgaata
aagcaatctatttatttagtagataaggaaaacaagcaaaaacaattgaatcacctttta
caagataaatccattgtttcggcactggtattcactcgtaccaagcatggtgctgaccgt
gttgtgcgcgagttgactgcagtgaatattgccgctcaggccattcatggaaacaaatct
cagaatgcccgccagagtgcattgagcaatttccggagtggcgtaacgcgagtattggta
gcgacggatatcgcggcaagaggaattgatattgaggagctttcgcatgtaatcaacatg
aatctccctaatattccagagacctacgttcatcgaattggccgtaccggtagagcagga
atgagcgggatcgcgatctccttttgcgaagttgacgaaattccgtatcgcagggatatt
gagaaattgattgggaagaccattcctgaagtgaaagaccatccctatccaatgatgagt
agaacgcagcctgtaaaggcggatagaccatcgatatcagcagtccaaaaaccccaaaag
cctgctaaatccaaagcaaacccggtgcgcaagcccaagtccgagtggtttaaaaaagga
agtaaagcaggaagtaaaacaagcagataa
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