Paenibacillus baekrokdamisoli: Back11_45070
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Entry
Back11_45070 CDS
T06671
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pbk
Paenibacillus baekrokdamisoli
Pathway
pbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Back11_45070 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbk03021
]
Back11_45070 (rho)
03019 Messenger RNA biogenesis [BR:
pbk03019
]
Back11_45070 (rho)
Transcription machinery [BR:
pbk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Back11_45070 (rho)
Messenger RNA biogenesis [BR:
pbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Back11_45070 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
OB_RNB
AAA
S1CSD-TOTE-2
AAA_22
AAA_25
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
BBH23162
UniProt:
A0A3G9IXV4
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All DBs
Position
complement(5070208..5071656)
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AA seq
482 aa
AA seq
DB search
MSELQITDLEVMKLTELYKLAKQHQIPYYGQLKKRELIFAILRAQAEQSGLMFMQGVLEI
LPEGFGFLRPINYLPSKEDIYISASQIRKFDLRSGDLVSGKCRTPKENERYFGLLQVNAV
NGESPETAAERLHFPALTPLYPEKKLKLETESSKISTRIMDLLAPVGLGQRGLIVAPPKA
GKTLLLKEIANSISTNHPEIELFVLLIDERPEEVTDMSRSVKGEVVASTFDELPENHIKV
AELVLERALRLVEHKKDVVILLDSITRLARAYNLVVPASGRTLSGGIDPAAFHRPKRFFG
SARNVEEGGSLTILATALIETGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPALDIRR
SGTRREEMLLSKEELDKVWAIRKNMNDSMEFVDGFLKKIGDTKTNEEFLAVLDLPPPPKA
PTSASRSSQSTSASRSSQSTSASRSSQSTNATSNGSQSTGSSSAGRRPTRSTASVPNGTV
KT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacttcagatcacggatcttgaagtgatgaagctcacagagctttataagctg
gccaaacaacatcagattccctattatggacagctgaagaagagagaattgatatttgcc
attctgcgtgcgcaagccgaacagagcggcctcatgtttatgcaaggtgtacttgagatt
ttacctgaaggctttggctttctcagaccgattaattatttgccaagtaaggaagacatt
tatatctcagcttcacaaatacgcaaattcgatctaagatctggtgatcttgtttcagga
aaatgccgcacacccaaagaaaacgaacgatattttggtttgttacaggttaacgccgtc
aatggagaaagccccgaaactgctgctgaacgtctacactttcctgcccttactcctctc
tatcccgaaaagaagcttaagctagaaacggaatcatcgaaaatctcaacacgcattatg
gatctattagcacctgtcggacttggtcaacggggtcttatcgttgcaccacccaaagca
ggtaaaaccttattgttaaaggaaattgcgaatagtatttcgacgaatcatccggagatt
gaattgtttgtgcttcttatcgatgagcggccagaggaagtaaccgacatgtctcgttcg
gttaaaggtgaggttgttgcttctacgtttgatgaactgccagagaaccatatcaaagta
gctgagcttgttcttgagcgcgctctaaggcttgtggagcataagaaagatgtcgttatt
ttgctagatagcataacgcgtcttgctcgtgcttataacctggttgtgcctgcatcagga
cggacactcagtggtggtattgatccggcagcattccatcgccctaaacgtttttttggt
tctgcgcgtaatgttgaggagggtggcagcttaacgatactggccactgcattaattgaa
acaggatcacgtatggatgatatcatttatgaagagtttaaaggtacaggcaatatggag
cttcaccttgatcgtaagctggcagaacgtcgtatcttcccggcactcgatattcgcaga
tccggtacgcgacgcgaagaaatgcttttgtcaaaggaagagcttgataaagtttgggcg
attcgtaaaaatatgaacgattccatggagtttgtggatggattcttgaagaaaattggg
gacaccaaaacaaacgaggaattccttgctgtgcttgatttgccgccaccaccgaaggcg
cctacaagcgcaagcagatcctcacaaagcacgagtgcgagcagatcctcacaaagcacg
agtgcaagcagatcctcacaaagcacgaatgccacaagtaatggaagtcaaagtacagga
agttcgagtgcaggtagacgcccgactcggtcaacagcatccgttccgaacggaacagta
aaaacataa
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