Paenibacillus baekrokdamisoli: Back11_53350
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Entry
Back11_53350 CDS
T06671
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pbk
Paenibacillus baekrokdamisoli
Pathway
pbk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Back11_53350 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbk03021
]
Back11_53350 (rpoC)
03400 DNA repair and recombination proteins [BR:
pbk03400
]
Back11_53350 (rpoC)
Enzymes [BR:
pbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Back11_53350 (rpoC)
Transcription machinery [BR:
pbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Back11_53350 (rpoC)
DNA repair and recombination proteins [BR:
pbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Back11_53350 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BBH23990
UniProt:
A0A3G9IYN3
LinkDB
All DBs
Position
6041559..6045188
Genome browser
AA seq
1209 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFHAGMGAEAVKKLLQ
DIDVERELETLKEDLRTAQGQRRNRAIKRLEVIEAFRNSGNMPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEAKGSGSVFSTVNEAISAYQRGIVSLHARIFIP
VKVLNKTIFTEAQQKSLISTTVGKVIFNEIYPEDFPYINEPTKVNLLQGTPDRYFVHEKG
ADLEKFLDEVPQMGGVGKEYLGLIIAECFRKYHTTKTSIMLDKIKQLGFTYSTRAGITIA
VSDVIVPPEKVEILRESEDKVKVVSNQYRRGLITNEERYDRVIEIWSKTKDSITDILMKS
MDRYNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFSVSKIQDGKEVIEDL
YDRIEGRYSFETVRNPKTGEIILHRNQLIDSNKAEEVIDAGVEKLQIRSVLSCRARHGVC
KICYGRNLATGKFVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIISELDGVIKDIRETKDRREIEVQGEAESKVYAVTYGSRIRVTKGKHIEA
GDELTDGSIDPKDMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
VEAGDTALLPGAFVDIHEYEANNREAILAGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMQRYRGIKLSGAGMDDYAVAAEEQ
QEAVTVTVE
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtgaacaacttcgagtatatgaagattggtttggcatctccggataaaatc
cgctcgtggtcccgcggagaagtgaagaaaccggaaacgatcaactacaggacgctgaaa
ccggagaaagaaggcctgttttgcgaaaaaatcttcggaccgacaaaggactgggagtgt
cattgcggcaagtataaacgcgtgcgttataaaggcgtagtttgtgatcgctgtggtgtt
gaagtaactcgtgctaaagtccgtcgcgaacggatggggcatattgagcttgctgctcct
gtatcgcatatttggtactttaaaggtattccgagccgcatgggtcttgcactggacatg
tcgcctcgttcgctggaagagattatttattttgcatcttatgttgttacggatccaggg
gatacgccgcttgagaaaaagcagctattgtcggagaaggaatatcgcagctaccgggag
aagtacggctacggcttccatgctggcatgggtgcagaagcagtgaagaagcttcttcaa
gatattgatgtagaacgcgagcttgagacgttgaaagaagatcttcgtacggctcaagga
caacgtcgtaatcgcgcgattaaacgactcgaggtcatagaagcattccgtaactctggt
aatatgccagaatggatgattcttgatgttctaccggttatccctcctgagctgcgccca
atggtacaactcgatggtggccgttttgcaacgtctgaccttaatgatctatatcgtcgt
gttattaaccggaacaatcgtttgaagcgactccttgatcttggcgcacctgatattatc
gtgcaaaatgagaaacggatgcttcaagaagcagttgatgctcttatcgataacggacgc
cgtggtcgtccggtaacaggtcctggtaaccgtccgcttaaatccctcagccatatgctg
aaaggtaagcaaggacgtttccgtcagaacttacttggtaaacgtgttgactactctggt
cgttccgttatcgtagtaggacctagcctcaaaatgtaccaatgtggtcttcctaaagaa
atggcgcttgaacttttcaagcctttcgttatgaaggagcttgtaaataaaggactcgcg
cataatattaagagcgctaaacgcaaagttgaacgtgtaagcccagaggtttgggacgtt
cttgaagaagttattaaggagcatccggttcttttgaaccgtgcaccaactcttcataga
ctgggtatccaagcatttgagccgatccttgttgagggacgcgcaatcaaattgcatccg
ctcgtatgtacagcatataatgccgatttcgatggtgaccaaatggccgttcacgtacca
ttgtctgcagaagcacaagctgaagctagactattgatgcttgcatcgggtaacattttg
aacccgaaagacggtaaaccggttgtcacgccttcacaggatatggtcttaggaagcttc
tacttgacgatggataataaagaggctaaaggtagtggatcggtatttagtaccgttaac
gaagcgatttctgcgtatcaacgtggtatcgtatccctacatgctcgtatatttatcccg
gttaaggtattgaataagacaatctttacggaagctcaacagaagtcgcttatttccaca
actgtaggaaaagtgatattcaatgagatttatccagaagatttcccttacatcaatgag
cctactaaagttaaccttttgcaaggaacgccggatagatatttcgtacacgaaaaaggt
gccgatcttgagaagttcttggatgaagtaccacaaatgggcggagtcggtaaagaatat
ctcggtttaattattgctgagtgtttccgtaaataccacaccaccaaaacatccattatg
cttgataaaatcaaacagcttggttttacctactcaactcgtgcaggtattacgattgcc
gtatccgacgttatcgtaccgcctgagaaggttgaaattctcagggaatcggaagataag
gttaaagtcgtttcaaaccaatatcgtagaggtttgatcacgaatgaagaacgttatgac
cgtgttattgaaatctggagcaaaacgaaagattccattacggatatcctcatgaaatcg
atggatcgttataattccatcatgctcatggttgattccaaagcgcggggtaacaaatca
cagattactcaacttggtggtatgcgtggtctgatggccaatccatccggtcgtattatt
gaattgccaatcaaatcgaacttccgtgaaggcctcactgtactcgagtactttatctcg
acgcatggtgctcgtaaaggtcttgccgatacagcgctccgtacagccgattcagggtac
ctgactcgtcgtctggttgacgttgcgcaggatgtaatcgttcgtgaagatgattgtgga
acagacaaaggattctctgtaagcaaaattcaagacggtaaagaggtaattgaagatcta
tacgaccgtattgaaggccgctactcctttgaaacagttcgcaatccgaagacaggcgag
atcattttgcatcgtaaccagcttattgattccaataaagctgaagaagttattgatgct
ggcgttgagaaactgcagattcgttctgtccttagctgtcgtgcgcgtcacggtgtttgt
aaaatttgttacggccgtaaccttgcaacaggtaagtttgtagagatcggagaagcagtt
ggtattatcgcagctcaatcgatcggtgaaccaggaacgcagcttacgatgcgtactttc
cataccggtggtgtagctggagacgatatcacacaaggtttgccgcgtattcaagagctc
ttcgaggctcgtaatcctaaaggtcaggcgattatttcagagcttgatggtgttattaaa
gacatcagagaaacgaaagatcgtcgtgaaattgaagttcagggtgaagcggaatcgaaa
gtatatgcggttacctatggttcgcgtatccgtgttacgaaaggtaagcatattgaagcc
ggcgatgaactgacagatggttcgatcgatcctaaagatatgcttcgcatcaaaggaatt
cgaggcgtgcagaactatattctacaagaggttcagcgcgtttatcgtaaccaaggggta
gaaatcaacgataagcatattgaagttatgatcaaacaaatgcttcgtaaaatacgtatc
gttgaagcaggcgatacggcacttctaccaggtgcgttcgtagatatccatgaatacgaa
gctaataaccgtgaagctattctagctggcaaagagcctgctgtcgcaaaaccagtcttg
cttggtattacgaaagcatcgctcgaaaccgattcattcctttctgcagcatccttccag
gagacaacacgtgttcttacggatgcagcaattaaaggaaaggttgaccaattgcttggc
ttgaaagagaatgttatcatcggtaagctaattccagctggtacaggaatgcagcgttac
cgtggtatcaagctttcaggtgctggaatggatgattatgcagttgcagctgaagaacag
caagaagcggtaactgtaacagtagagtaa
DBGET
integrated database retrieval system
