Paenibacillus baekrokdamisoli: Back11_58620
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Entry
Back11_58620 CDS
T06671
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbk
Paenibacillus baekrokdamisoli
Pathway
pbk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Back11_58620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbk03400
]
Back11_58620
Enzymes [BR:
pbk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Back11_58620
DNA repair and recombination proteins [BR:
pbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Back11_58620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BBH24517
UniProt:
A0A3G9IZZ0
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All DBs
Position
complement(6600254..6601165)
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AA seq
303 aa
AA seq
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MNRTMKGKVMIEGQELTISNPTKLLFPEMGITKAMYLQRLTALSPWLLKHCQDRYLTTIR
YPDGVTGKSFYQKNCPAPTPAFVQTDEREGIHYVKLQSLPVLLWLGNLACLEFHASFDRI
SDRDHPTEWVLDIDPSLEEEPRIMEAASLVGELLESLGIASTPKTSGATGIQIIVPLIPD
LTFDELRRIGEFVGTFLSNKYPRLFTIERLKKLRGDLIYIDYLQHYQGKTIIAPYSPRAR
NRATVSTPLYWEEVRRNVAITDFNLLNIEARLAQEGDLLDLVAPQPLRHILAFISGSKKG
QSE
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtacaatgaaaggcaaagtaatgattgagggacaggaactaacgatcagtaac
ccaaccaagctcctatttcccgagatgggtattacgaaggcgatgtacctgcagcgactt
accgctctttcgccttggctgcttaagcattgtcaggatcgttatttgacgaccattcgt
tatcctgacggtgtaaccggcaaatccttttatcaaaaaaactgccccgcacctacgcct
gcattcgtgcaaaccgatgaacgtgaggggattcattacgtaaagctgcagtcgctgcct
gtactcctctggctcggtaacttggcatgtctggaatttcatgcttcctttgatcgcatc
agtgatcgagaccaccctactgagtgggtgcttgatatcgatccttcgttagaggaggag
ccgcgtatcatggaagcagcatccttggtgggtgagcttctcgaatcgcttggaatcgca
tctactcccaagacatcaggggcgacaggtattcaaatcattgtcccccttataccagac
ctcaccttcgatgagctccgtcggatcggcgaattcgtcggtaccttcttatcgaacaag
tacccccgtctgtttacaatcgaacgcttgaagaagctgcgcggggatcttatttatatt
gactatcttcagcattatcagggcaaaacgattattgcaccctattctccacgggcccgc
aatcgagcaacggtgtctacgccgctttactgggaagaggttcgacgcaacgtcgccatt
acagactttaatctccttaatattgaagctcgactcgcccaagagggggatctgttagat
cttgtagctccccagccgttgcggcacatactagccttcatcagcggctcaaaaaaaggg
caatctgaatga
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