Stutzerimonas balearica: CL52_16210
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Entry
CL52_16210 CDS
T03573
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pbm
Stutzerimonas balearica
Pathway
pbm02020
Two-component system
pbm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CL52_16210
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CL52_16210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbm03021
]
CL52_16210
Transcription machinery [BR:
pbm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CL52_16210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Acyl-CoA_dh_C
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AJE16506
UniProt:
A0A8D3Y387
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All DBs
Position
3444370..3445875
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AA seq
501 aa
AA seq
DB search
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLEREEDGDDYDGAD
PMAEASEAGSSTGDNDQPALDSRYEETSHSAESLDDNEWSERIPSELPVDTAWEDIYQTS
ASSLPASDDDEWDFTTRTPTGLSLQAHLLWQLNLTPMSDTDRLIATSIIDGINDQGYLEE
SLEDILASIDPELDVEMDEIEVVLHRVQQFEPAGIGARDLRECLLLQLRQLPSNTAWLAE
AQRLVSDYLDVLGNRDYSALMRRMKLKEDELRQVIELVQSLNPRPGSQIEASEPEYVVPD
VIVRKHNGRWLVELNQEAMPRLRVNPQYAGFVKRADTSADNTFMRNQLQEARWFIKSLLS
RNETLMKVATQIVEHQRGFLEHGEEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRG
IYELKYFFSSHVSTTEGGECSSTAIRAIIKKLVAAENPKKPLSDSKIAGLLEAQGIQVAR
RTVAKYRESLGIAPSSERKRL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcctgaagatgggccagcagctgaccatgacgcctcagctgcaa
caagccattcgattgctccagctttcaacgctggatctgcaacaggaaatccaggaggcc
ctggattctaacccgatgctcgagcgcgaggaggacggcgacgactacgacggcgccgac
ccgatggccgaagccagcgaagcggggagcagcaccggagacaacgaccagcctgctctc
gacagccgctacgaagagaccagccactcggccgagagcctggacgataacgaatggagc
gagcgaattcccagcgagctgcctgtcgataccgcctgggaagatatctaccagaccagc
gccagcagcctgccggccagcgacgatgacgagtgggatttcaccacgcgcaccccgacg
ggcctcagccttcaggcccacctgctctggcagctcaatctcacgccgatgagcgatacc
gatcgcctgatcgccacctcgatcatcgacggcatcaacgaccagggttatctggaagag
agcctggaagacattctcgcgtcgatcgaccccgaactcgatgtggagatggacgagatc
gaggtcgttctgcaccgcgtacagcagttcgagcctgccggtatcggggcccgcgatctg
cgcgaatgcctgctgctgcagttgcgccagctgccgtcgaacaccgcctggcttgccgaa
gcgcaacgcctggtcagcgactacctcgacgtgctcggcaaccgcgactacagcgctcta
atgcgtcgcatgaagctcaaggaagacgagctgcgccaggtcatcgaactcgtgcaatct
ctcaaccccaggcccggctcgcagatcgaagccagcgaaccggagtatgtcgtcccggat
gtcatcgtgcgcaagcacaacggccgctggctggtcgagctcaatcaggaagccatgccg
cgcctgcgcgtcaatccgcagtacgccggcttcgtcaagcgagccgatacgagcgccgac
aacacgttcatgcgaaatcagctgcaggaggcgcgctggttcatcaagagcctgctgagc
cgcaacgagaccctgatgaaagtggcgacccagatcgtcgagcatcagcgcggttttctc
gagcacggcgaagaggcaatgaagcccctggtcctgcatgacatcgccgaagccgtcggc
atgcacgagtcgaccatttcgcgcgtcacgacacagaaatacatgcatacgccgcgcggc
atctacgagctcaagtactttttctccagccacgtaagcacaaccgaaggcggcgaatgc
tcgtcgacggcgatccgcgcgatcatcaagaaactggttgccgcggaaaacccgaaaaag
ccattgagcgacagcaagatcgctggtttactggaggcacaaggcattcaggtagcgcgt
cgtaccgtggcgaaatatcgcgaatcactgggcatcgcgccgtcaagtgagcgaaagcga
ctgtag
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