Stutzerimonas balearica: CL52_18910
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Entry
CL52_18910 CDS
T03573
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbm
Stutzerimonas balearica
Pathway
pbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CL52_18910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbm03019
]
CL52_18910
Enzymes [BR:
pbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CL52_18910
Messenger RNA biogenesis [BR:
pbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CL52_18910
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AJE17011
UniProt:
A0A8D3Y503
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All DBs
Position
4003996..4005807
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AA seq
603 aa
AA seq
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MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ELLFPNGHPDREHRHGPKQPRVLVLTPTRELAAQVHDSFKLYARDLPLKSAVIFGGVGMN
PQIQALAKGLDVLVACPGRLLDLAGQNAVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAQRQNLLFSATFSKDIIDLANKLLRDPERIEVTPPNTTVERIEQRVFRIAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQNARTKALADFKANAI
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKGIERLTKQNIPAGDMMGFDAAAVEAEKPEVREPRQPRQARGERKPRTEKPEATAAGEE
KKPRNRRGKGKAKKPREGAGEPTQAITRPPQLPPDRDPEEFLDDEVDNFGNRVDYVSPYQ
NKPGRGRRPASGNTGQPRAAGAGAGSNSGRGAGGAGRPKGKGQGQGAKGQGQGQGRNGSR
RNADNRRREPEVAARQQEVAKPEKQPVIIHKSRGGVISAEMLDQLPSSRKREGEKPALLT
RNR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttggccggtgccgtcgaggccgccggt
tacacccagcctacccccgtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcccagaccggcaccggcaagacgggcggcttcgcccttccggtgctc
gaactgctgttccccaacggccacccggaccgcgaacaccgccacggaccgaagcagcca
cgcgttctggtgctgacaccgacccgtgagctcgccgcccaggtacacgacagcttcaag
ctctacgcccgtgacctgccgctgaaaagcgcggtgatcttcggcggtgtcggcatgaat
ccgcagatccaggccctggccaaggggcttgacgtactcgtcgcctgccccggccgcctg
ctcgatctggccggccagaacgccgtcgatctgtcccatgtggaaatcctcgtgctcgac
gaggccgaccggatgctcgacatgggcttcatccacgacgtcaagaaagtcctggcgcgg
ttgccggcccaacggcagaacctgctgttctcggcgaccttctccaaggacatcatcgac
ctcgccaacaagctgctgcgcgacccggaacgcatcgaggtcacaccgccgaacaccacg
gtcgagcgtatcgagcagcgggttttccgcattgccgccagccacaagcgcgccctgctc
gcccacctgatcacccagggcgcctgggagcaggtgctggtcttcacccgtaccaagcac
ggcgccaaccgcctggccgaatacctggagaagcacggcctgtcggctgcggcgatccat
ggcaacaagagccagaatgcccgcaccaaggcgctggccgacttcaaggccaacgcgatt
cgcatcctcgtggccaccgacatcgccgcccgcggcctggacatcgaccagttgccgcac
gtcgtcaacttcgaactgccgaacgtcgaggaagactacgtgcaccgcatcggccgcacc
ggccgcgccgggcgcagtggcgaggcgatttcgctggtggccccggacgaggaaaagctg
ctcaagggcatcgagcggctgaccaagcagaacattcctgctggcgacatgatgggcttc
gacgctgctgccgtggaggcagagaagccggaagtgcgtgagccgcgccagcctcgccag
gcccgcggtgagcgcaagccgcgcaccgagaagccggaagcgaccgccgcaggcgaagag
aagaagccacgcaaccgccgcggcaagggcaaggcgaagaagcctcgtgaaggtgctggc
gaacccacccaggcgatcacccgcccgccgcagctgccgcccgaccgcgaccccgaagag
tttctcgacgacgaggtggacaacttcggcaaccgggtcgactacgtcagcccgtaccag
aacaagccaggccgcggccgccgcccggcatcgggcaataccggccagccgcgcgccgct
ggcgcgggtgccggctccaattcaggtcgtggcgccggcggtgccggccgcccgaagggc
aagggccaaggtcaaggtgccaagggtcaggggcagggccagggccgcaacggttcacgg
cgcaacgccgacaaccgccgccgcgagccggaggtcgccgcccgccagcaggaagtggcc
aagccggaaaaacagccggtgatcatccacaagtcgcgcggcggcgtgatcagcgccgag
atgcttgaccagctgccgtcatcgcgaaagcgcgagggcgaaaagcctgcgctgctgacg
cgcaaccgctga
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