Paracoccidioides brasiliensis: PADG_05711
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Entry
PADG_05711 CDS
T03549
Name
(RefSeq) chromatin-binding exonuclease XRN1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pbn
Paracoccidioides brasiliensis
Pathway
pbn03008
Ribosome biogenesis in eukaryotes
pbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PADG_05711
09123 Folding, sorting and degradation
03018 RNA degradation
PADG_05711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbn03019
]
PADG_05711
03009 Ribosome biogenesis [BR:
pbn03009
]
PADG_05711
03016 Transfer RNA biogenesis [BR:
pbn03016
]
PADG_05711
03036 Chromosome and associated proteins [BR:
pbn03036
]
PADG_05711
Messenger RNA biogenesis [BR:
pbn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
PADG_05711
mRNA degradation factors
5'-3' decay
5' exonucleases
PADG_05711
Ribosome biogenesis [BR:
pbn03009
]
Eukaryotic type
Pre-60S particles
RNases
PADG_05711
Transfer RNA biogenesis [BR:
pbn03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
PADG_05711
Chromosome and associated proteins [BR:
pbn03036
]
Eukaryotic type
Gene silencing
piRNA pathway
PADG_05711
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Peptidase_C92
RXLR
Motif
Other DBs
NCBI-GeneID:
22584591
NCBI-ProteinID:
XP_010761381
UniProt:
C1GEM5
LinkDB
All DBs
Position
Unknown
AA seq
1445 aa
AA seq
DB search
MGVPKFFRWMSERYPAISQLIAENRIPEFDCLYLDMNGIIHNCTHRDSDSPTFRMTEDKM
FIAIFNYIEHLYGKIKPKKLFFMAIDGVAPRAKMNQQRARRFRTAYDAEVAKEKAIKQGI
EMPKEAAFDSNCITPGTEFMAKLTQQLKYFINKKVSEDVEWQGVEIVLSGHEVPGEGEHK
IMEYIRQTKAQPGYHPDVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQSQKKSKE
LEHQNFYLMHLCMVREYLELEFQELEEEDALQFPFDLERIIDDFILMAFFVGNDFLPNLP
NLHINEGALAWMFKIYKQVLPKLGGYINEQGTINLERLGILLDSLSDVEFRFFEAEYSDA
RWIKSKIKCGELERGNPEPSQISKEFTISPAQKQIFNRIKKYVSHHPVNDQGKPVPLDLS
SNLPARDRKFVEQLADDLHLQWTTVSNEHGDRFLRVQLPSKEDPANGNSGEDDDENEEEG
QIALLRVMRRYENAKVKETTAEEAQQAAEKKYERKFQEWKNNYYKSKFRWGMDNHEEMRK
LTENYVQGLQWVLYYYYRGVASWPWFYQYHYSPMISDVKLGLKADMNFDLGQPFHPFQQL
MGVLPDRSKQIVPAAFHELMTSPESPIIDFYPRDFELDMNGKKMDWEAVVKIPFIEEKRL
LKAMATKEHLLTPEEKARNEFGVTLKFTYSPDIEYIYPSSLVGVFPDIARCHCIENVFDL
PTMDGLEPFVGLVEGVKLGHEALAGFPSLKTLPHHGQLSFHGVSVFQQESRNESMVVTLT
EPENRSSVELAKQKLGQRVHVGYPFLQEAKVTRVSDELFDYMCVDGEQHVVSIPHTPSQA
NQWKRKAEQIESYYSKRLGMIVGEIESMVHVQMLKGLIKTDQGATVKEFADIPGIETDYA
LQLVVDRVMCEDNRFIEREALPVEEEFPEGTRAFFLGEYNYGAPVHITGHENGKLSGLVS
VVKAKEPEFGRDLTRSAERISPYSPSFAIARSLHLNPLTLAKITSSFTVILDGQRINLGL
NLKFEAKKLKVLGYSRRGPTGWEFSEKATNLLQQYMIKFPEFIAGIQRKPQGDGFQATDF
YPAEIASAKIKEIQAWLKSIEAKNFERVPLEAEQLDSDLVKSIEHAADELVRTRPEPEPK
KMRGVPRNALLKPSDAEHRLGNQSFSLGDRVIYVQESGKVPIATRGTVVGLMRTSSTLLL
DIVFDVSFMSGTTLGDRCSLFRGSTVPASAALNLTNKQLIAVTRASAEQNRSQQQQQQPL
TSQGYRASLGPDGKGQLKEARTPPPLRGSFRGAVVGQPGAWPRGNGGFRGCDGRGQSEQT
LPIRTHPNSASPQQQQSQPQPNGFRGRGGRANFNNMQPNGYVQRGRGSPREGFGSPARAG
YVSVERTDPDADVVNHNPNFRPRPYNNVPPPSSLDRRGNGRGRGGRGSPRAGGRGMNRGQ
GAMAT
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcctaagtttttcagatggatgtcagagcgataccctgcaatatcgcagctg
attgcagaaaaccgaattccggagttcgactgtctatacctcgatatgaatggtattatc
cacaattgtacccacagggactcggactcaccaacttttcgcatgacggaggataaaatg
ttcatcgcgattttcaactacatagaacatttatatgggaagatcaaaccgaaaaagctg
ttttttatggctatagatggagtcgcaccccgcgcgaaaatgaaccagcaacgggcccga
agattccgaaccgcatatgacgctgaggtcgcaaaggagaaggcgattaagcaggggatc
gaaatgcccaaggaggcagcgtttgatagcaattgtataactccaggaaccgagttcatg
gcgaagctgacgcagcagctgaaatatttcatcaataagaaagtatcagaggatgtggaa
tggcagggcgtcgagatcgttctgtcaggccacgaggttcctggcgagggagaacataag
atcatggaatatatccggcagacaaaggcgcagccggggtatcatccagatgtacgacat
tgtttatacggattggatgctgatttgatcatgttgggtctgttgagtcacgatccccat
ttttgcttgcttcgagaagaagtcacgtttgggagacagagtcagaaaaagtccaaggag
ctagagcaccagaatttctatctcatgcatctctgtatggtcagggaatacctagagctg
gagtttcaggagttggaggaggaggatgccttgcagtttccttttgatctggaacggatt
atcgatgatttcattctgatggcgttttttgttggaaatgactttttgccgaatcttcca
aatttgcacatcaatgagggtgcgctggcttggatgttcaagatatacaaacaagtttta
ccgaaactaggaggatatattaacgagcagggaacgatcaatttggaacgactggggatt
ctccttgattccctatccgatgttgaattccgtttcttcgaagcagaatattcggatgcc
cgctggatcaaatccaaaattaagtgcggggagttagagagaggaaatccagaaccctct
caaatctcgaaagagtttacgatttccccggcgcagaagcagattttcaatcgaattaaa
aaatatgtctcacatcacccagttaatgaccaagggaaacctgtccctctcgacctctcc
tccaatctaccagcaagggatcgcaaattcgtagagcagctggctgatgatttgcatctt
caatggaccacagtctctaacgaacatggagatcgatttctacgagtacagctcccatcc
aaggaggacccagccaacgggaactctggggaagatgatgacgagaatgaggaagagggc
cagattgctcttcttcgtgttatgagaagatacgaaaatgcgaaggtgaaggaaacaacg
gcagaagaagctcagcaggcagctgagaagaagtacgaacgcaagttccaggagtggaag
aacaactattacaagtccaaattcaggtgggggatggataaccatgaggagatgcgcaag
ttaaccgaaaactacgtgcaaggtctgcagtgggtgctctattactattatcgaggagta
gcttcgtggccctggttctatcaataccactattccccgatgatatctgatgtcaagctt
ggtttgaaagctgatatgaatttcgatctcggacaaccttttcaccctttccagcagtta
atgggtgttctacctgatagaagcaaacaaatcgtccccgctgctttccacgagctgatg
acatctcctgaatccccgatcattgacttttatccccgcgatttcgaacttgatatgaat
ggcaaaaaaatggactgggaagctgttgtcaaaattccattcattgaggaaaaacgcttg
cttaaggccatggcgacgaaagaacatcttttgacaccagaagaaaaagcaagaaatgaa
ttcggcgttacgttgaaattcacatattctccagatatcgaatacatctatcccagctcg
cttgttggcgtgtttcccgatatcgccaggtgtcactgtatcgaaaatgtgttcgacctt
cccacaatggatggtttggaaccttttgttggcctagtggaaggggtcaagttaggacat
gaggcattggcgggatttcctagcctgaaaacattaccgcaccacggtcaactaagcttc
catggagtatccgtgttccaacaggaaagtcgtaatgaaagcatggtcgtcactcttacg
gagccagaaaaccgctccagcgttgagttggcgaagcagaaactgggtcagcgagtccat
gttggctaccccttccttcaagaggccaaagtaactcgcgtatcagatgaacttttcgac
tacatgtgtgtcgacggtgaacagcatgtcgtttctatcccccacacgccctcccaagcg
aatcagtggaagcgcaaggccgagcagattgagtcatattacagcaaaaggcttggtatg
atagttggcgaaatcgagtccatggttcatgttcagatgctgaaaggattgataaagaca
gaccaaggtgctacggtcaaggagtttgctgatattccgggtattgaaacggattatgct
ttgcagctggttgtggaccgcgtgatgtgtgaggataaccgctttatcgaacgcgaagct
ttaccggttgaagaggaattccccgagggaactagggctttcttcttgggtgaatacaat
tacggtgcaccggtacatattactggacacgaaaatggcaaattgagtggtcttgtttct
gtggtcaaggccaaggagccagaatttggtcgtgatctcaccagaagtgctgaaaggatt
tctccttacagtccatcgttcgcgattgctcgcagtctacatctaaatccactaacacta
gccaagatcacttcctcgttcaccgtaatcttggatggtcagcgtatcaacctgggcctc
aacctgaaattcgaagcgaaaaagctcaaggtacttggatactctcgccgtgggccgacc
gggtgggaattcagtgaaaaggcgaccaaccttctccaacagtacatgatcaaatttccc
gagttcatcgcaggcatacaacggaaaccccaaggtgatggcttccaagctacggatttc
tatcctgccgaaatcgcatctgcaaaaatcaaggagattcaggcgtggctcaagtctatc
gaggcgaagaatttcgagcgtgttccattggaagcggagcaacttgattcagatcttgtg
aaatccattgaacacgccgcagatgaactcgtccgtacgcgtccagaaccagaacccaaa
aagatgagaggcgtgccgaggaatgctttattgaaaccatccgatgcggaacatcggctt
ggcaaccaatcgttctctcttggtgatagggtgatctatgtgcaggagtctggcaaggtc
cccattgccacaagaggcactgtcgttggtctcatgaggacttccagtaccctgctcctt
gacatcgtatttgacgtctccttcatgagcggtacaactctgggagacagatgttcgcta
ttccggggctccaccgttccagcatcggccgccttaaacttgaccaacaagcaacttatc
gccgttacccgtgcttcagctgaacaaaatagatcacagcaacagcagcaacagcctctc
acctcccagggataccgagcttctctcggaccagatgggaaaggccagctgaaagaggct
agaaccccgccgccactaaggggcagtttccgcggtgccgtcgtaggacagccaggtgcg
tggcctaggggcaacggaggattccgtggctgtgatggccgcggccagtcggagcaaaca
ttgccgattcgcactcacccaaacagtgcctcaccacaacagcaacagtcccaaccacaa
ccaaatggcttccgcggacggggcggtcgtgctaatttcaacaacatgcagccaaacggc
tatgttcaacgtggacgcggctccccacgtgaaggatttggttctccggctcgtgccggc
tatgtctcggtggagagaacagatccagacgcagatgttgtgaatcacaaccctaatttc
cgaccgagaccttacaacaacgttcctccgccgtcgtccttggatcgtcggggaaatggt
cgtgggagaggcggtcgtggatccccacgggccggcggtaggggtatgaatcgcggccag
ggcgctatggctacttga
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integrated database retrieval system
