KEGG   Paracoccidioides brasiliensis: PADG_06850
Entry
PADG_06850        CDS       T03549                                 
Name
(RefSeq) rRNA-processing protein SOF1
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
pbn  Paracoccidioides brasiliensis
Brite
KEGG Orthology (KO) [BR:pbn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pbn03009]
    PADG_06850
   04121 Ubiquitin system [BR:pbn04121]
    PADG_06850
Ribosome biogenesis [BR:pbn03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    PADG_06850
Ubiquitin system [BR:pbn04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     PADG_06850
SSDB
Motif
Pfam: WD40 Sof1 WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd EIF3I WD40_RFWD3 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_IFT140_1st MIOS_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_HPS5 WD_LRWD1 NBCH_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 22585475
NCBI-ProteinID: XP_010762112
UniProt: C1GHW4
LinkDB
Position
Unknown
AA seq 473 aa
MSSLLCRPDIVPVSESHQRIPGIQDSMKIKTLSRSAALLQEPGSNTSKLPRNLDPAQHPF
ERAREYTRALNATKLERMFAAPFVAQLGRGHVDGVYCLAKDPVSLERFASGSGDGVIKVW
DLATRDEIWHADAHENIVKGMCWTSDRKLLSCAADKTIKLFDPYNSASETPPLATYFGQS
AFTGVSHHETHPSFASSSSVISIYDLSRPSSTPSQTLHWPTSTDTITSLAFNRTETSILG
STATDRSIIMYDLRTSLPVTKMILKFASNAISWNPMEAFNFAVANEDHNIYIFDMRKMDR
ALNVLKDHVAAVMDVEFSPTGEGLVSASYDRTIRLWDRSKGHSRDIYHTKRMQRVFSTKF
TPDNKYVLSGSDDGNIRLWRAEASSRSGIKSTRERQKLAYDEALKQRYAHMPEIRRIKRH
RHLPKAIKKAGEIKAEEIAAIKRREENLRKHTKKKGEMPRHSEREKMILAKEQ
NT seq 1422 nt   +upstreamnt  +downstreamnt
atgtcatcccttttgtgccggcccgatattgtgccggtcagcgaatcacaccagcgaatc
cctggcatacaggacagtatgaaaataaaaactctttcaagatctgctgcattgctgcag
gagcctggctcaaatacgtcgaaacttccccgaaatcttgatcccgctcagcatccattc
gagagagcgcgggaatatacgagagcactcaatgccacgaagctagagcgtatgtttgct
gctccctttgtggctcagcttggacgtggacacgttgatggtgtatattgcctagctaag
gaccctgtgtccttggagcgtttcgctagcggaagtggtgacggggttattaaggtttgg
gatctggctactcgagatgagatatggcatgccgacgcacacgaaaatattgtcaagggc
atgtgctggacgtcagatagaaaacttctttcatgcgcagcagataaaacaatcaaactc
ttcgatccttacaactcagcatccgagacccctccgctggcgacatattttggacaatcc
gcattcacaggcgtttcccaccatgaaacccatccctcattcgcctcatcttcctccgta
atatccatatacgacctatccaggccgtcttccacaccttctcaaaccctccactggccc
acaagtaccgacacaatcacctccctagccttcaaccgaacagaaacttcaattctcggc
tcgacagccacagaccggtcaattattatgtatgatctccgaacttcgttaccagtcaca
aagatgatcctcaagtttgcctccaacgcaatttcctggaacccgatggaagcgtttaat
ttcgctgtcgccaatgaagatcataatatatatattttcgatatgcggaaaatggaccgg
gcgttgaatgtgcttaaagatcatgttgcggctgttatggatgtagaattcagcccgaca
ggagaaggcttagttagtgcttcgtatgaccgcacgattcgattatgggaccggagtaag
ggtcattccagagatatttatcacacgaaacgaatgcaaagagtattctccactaaattc
acaccagacaacaaatacgtcctgtctgggtcggacgatggcaacattcgtctctggcgc
gcagaagcatcttcgcgcagcggcattaagagcacacgtgagagacagaaacttgcttac
gatgaggctctcaagcagcggtatgctcatatgcctgagatccgccgcattaagcgtcat
cgccaccttcccaaggctataaagaaggctggcgagattaaggcagaggagatcgctgct
atcaagaggagagaggagaatctacgcaagcacactaagaagaagggagagatgccaagg
catagtgagagagaaaagatgattttggctaaagagcagtaa

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