Paracoccidioides brasiliensis: PADG_08293
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Entry
PADG_08293 CDS
T03549
Name
(RefSeq) ATP-dependent RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pbn
Paracoccidioides brasiliensis
Pathway
pbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PADG_08293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbn03019
]
PADG_08293
03041 Spliceosome [BR:
pbn03041
]
PADG_08293
03009 Ribosome biogenesis [BR:
pbn03009
]
PADG_08293
03016 Transfer RNA biogenesis [BR:
pbn03016
]
PADG_08293
Enzymes [BR:
pbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PADG_08293
Messenger RNA biogenesis [BR:
pbn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PADG_08293
Spliceosome [BR:
pbn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PADG_08293
Complex C
U4/U6.U5 tri-SnRNP related factors
PADG_08293
Ribosome biogenesis [BR:
pbn03009
]
Eukaryotic type
Pre-60S particles
Helicases
PADG_08293
Transfer RNA biogenesis [BR:
pbn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PADG_08293
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_16
Motif
Other DBs
NCBI-GeneID:
22586615
NCBI-ProteinID:
XP_010763521
UniProt:
C1GLQ2
LinkDB
All DBs
Position
Unknown
AA seq
1080 aa
AA seq
DB search
MDDLFNVFEDKPLSGIPPQGAPKPRAKKDKSRKRQSNGLVKDGSNTAGDQENGEIVDTPM
EDAGAAEPPEAQNGLPDAKRQRIQAEPETVVADTFETEQSREIAGSAGLQGAQDTKAVVL
SHQVRHQVALPPDYPYVPISEHKPPESPAKTWSFTLDPFQQVSIASIERGESVLVSAHTS
AGKTVVAEYAIAQSLRNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPTATC
LVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSA
TIPNAMQFAEWITKMHNQPCHVVYTDFRPTPLQHYFFPAGADGIHLIVDEKGVFREENFH
KAMESIAEKQGEDPANPMAKRKGKGKDKKINKGEGSKGPSDIFKIVRMIVMKNYNPVIVF
SFSKRECEAFALQMSKMAFNDESEKDMVSKVFNSAIEMLSDEDKELPQIKHILPLLRLGI
GVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWI
TPSEFVQMSGRAGRRGLDDRGIVIMMINEEMDPTVAKEIVRGEQDKLNSAFHLGYNMILN
LLRVEGISPEFMLERCFYQFQNTASVAGLEKVELVELEKEHASMVIADEGTIREYYELRQ
NIATYTSDMQSVITLPNYCLRYMQVGRLVQIQYMDYDFGWGAVVNYQRRKPPRNSPNEQY
PPHESYVVDVLLPISEDSAFTTKTIEPLPPGIRPTQPGGKVRLEVIPVLLYCIKTISHIR
LRLPQDLKQASTRNGIHRHIMEVQRRFPDGVPLIDPIEDMGIRDDSFKKLLRKIEVLESR
LLSNPLHNSPRLPDLYDQYAAKTELASKIKATKKKITEAMSIIQLDELKCRKRVLRRFQF
INEAEVVQLKARVACEISSGDELMLSELLFNGFFNNLTPEQCAAVLSVFVFEETSKETPP
ISKEELAKPLRDIQAQARVIAKVSQESKLTVNEDEYVKGFRWELMEVIYEWAKGKSFAEI
CKMTDVYEGSLIRTFRRLEECMRQMAQAAKVMGSEDLEKKFEKSLEMVKRDIVAAQSLYL
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggacgatctgttcaatgtgtttgaggataaacccctttcaggaattcctcctcaagga
gcccccaaacctcgagccaagaaggacaagagcagaaagagacagtcaaatgggcttgtg
aaggatggttctaatacggcgggagatcaggagaatggcgagattgtagataccccgatg
gaagatgcaggtgcagcggaacctcctgaagcgcaaaatggcctacccgacgcgaagcga
cagcgcattcaggcagaaccagagactgtcgttgccgataccttcgaaaccgagcagtcg
cgtgagatcgcaggctctgccggtcttcaaggcgcccaggataccaaagctgtcgtccta
tcccatcaagtgcgccatcaagtagccttacctcccgattatccatacgtcccaatctcg
gagcacaaacctccagaatctccggccaagacatggagcttcactcttgaccctttccaa
caggtctctatcgcgtcaatcgagagaggggagagcgttttggtatctgctcatactagt
gctggaaagacagtggttgcagaatatgccattgcgcaaagcttaagaaataaccagagg
gttatatatacgagtcctatcaaggcgctgagcaaccagaagtaccgagaatttgctgct
gaatttggcgatgtgggattgatgaccggtgacgtaacgataaatcccacagcaacatgt
ctcgtcatgacaactgaaattttgcgatccatgttatacagaggttctgagattatgcgc
gaggtggcctgggtagtttttgacgagatacattacatgcgagacaagacgcgtggtgtt
gtatgggaagaaactatcattcttcttccagataaagttagatatgttttcctctccgca
acaattccgaatgcgatgcaatttgccgaatggattaccaaaatgcacaatcaaccatgc
cacgtcgtctataccgatttccgaccaacccctctacaacattactttttccctgctggt
gctgacggaatccatctaattgttgatgagaaaggggtttttcgtgaagagaacttccac
aaagccatggagtcgatagcagaaaagcaaggcgaggatcctgctaatccgatggctaaa
aggaaaggcaaaggcaaggataagaaaataaataaaggagagggtagcaagggcccttca
gacatcttcaagatcgtaaggatgatcgtgatgaagaattacaacccggttatcgttttc
agttttagcaagagggagtgtgaggcctttgccctacagatgagcaagatggcattcaac
gatgaatcggagaaagatatggtcagcaaggttttcaatagtgccattgaaatgctctca
gatgaggacaaggagctgcctcaaattaaacatatcctaccgctgttgcgactggggatc
ggggttcatcactctggtcttctcccaattctcaaggaaactattgaaatcctgtttcaa
gaaggcttgatcaaagtgctctttgccacagagacgttctctattggattgaacatgcct
gcgaagaccgtggtttttacgagtgtccggaaattcgatggcgtaagccagcgctggatt
actccgtctgagtttgtgcagatgtccggccgtgccggacgtagaggtctggacgaccgt
ggcattgtcattatgatgataaatgaggagatggatccgacagttgcgaaggagatcgtc
cgtggagagcaagacaagcttaactcagcttttcatctaggttataacatgatattaaat
ctgttacgagtagaaggtatatcaccggagtttatgttggagcgatgcttttatcaattt
caaaatactgctagtgtagcgggattggaaaaagtagaactcgtcgaactggagaaggag
catgccagtatggtaattgctgatgaagggacgatacgggagtattatgagctgagacaa
aatatcgcgacatacacctcagatatgcagagcgtgatcactcttcccaactactgttta
cgttacatgcaggtggggcgccttgttcaaatacaatacatggactacgacttcggatgg
ggcgctgttgtcaactaccagagacggaaacctcctagaaactccccgaatgaacagtat
cccccgcatgagagctacgttgtcgatgtcttgctcccgatttcggaggattcggcattc
acaacgaaaaccatagaacccctgcctcctggtattcgacccacacaaccgggggggaag
gtccggttagaagttattcccgtgctcctttattgcatcaaaacaatctcccatattcga
cttcgtttgcctcaagacctcaagcaagctagcacaaggaacggaattcacaggcatatt
atggaagttcagaggcgattccccgatggagttccacttatagaccccattgaggatatg
ggcatcagggacgactcctttaagaaactcctaaggaaaatcgaagtgctcgaatcgcgt
ctattatccaatccactccataactcccctagacttccagacttatatgaccaatacgcg
gctaaaaccgaacttgcatcaaagatcaaagcgacaaaaaagaaaatcacagaggccatg
tcgataattcaactagacgagctaaaatgtcgcaaacgtgtccttcgtcgcttccaattc
atcaacgaggcggaagtcgtccagctgaaggcccgtgtcgcatgtgagatcagtagcggc
gatgagctgatgttgagcgagctccttttcaacggattttttaataacctcacacccgag
cagtgcgcggctgttcttagcgtgtttgtctttgaagaaacttccaaggaaacaccgcca
atttccaaggaggagcttgcaaaaccgctgcgggatatccaagctcaggcgagggttatt
gctaaagtgtcgcaggaatctaagctgactgtcaatgaggacgaatatgtgaaggggttc
cgatgggagttgatggaggttatctatgaatgggcgaaagggaaatcatttgcggaaatt
tgcaaaatgacggatgtctatgagggaagcttgatccgcacattccgccggctggaggag
tgtatgcggcagatggcacaggctgcgaaggtgatgggtagtgaagatttggagaaaaaa
ttcgagaagtcgctggagatggtgaagcgagatatcgtcgcagcgcaatcgttatatcta
tag
DBGET
integrated database retrieval system
