Acidipropionibacterium acidipropionici ATCC 4875: PACID_12380
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Entry
PACID_12380 CDS
T02345
Name
(GenBank) GIY-YIG catalytic domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pbo
Acidipropionibacterium acidipropionici ATCC 4875
Pathway
pbo03030
DNA replication
pbo03430
Mismatch repair
pbo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PACID_12380
03430 Mismatch repair
PACID_12380
03440 Homologous recombination
PACID_12380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbo03032
]
PACID_12380
03400 DNA repair and recombination proteins [BR:
pbo03400
]
PACID_12380
Enzymes [BR:
pbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PACID_12380
DNA replication proteins [BR:
pbo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PACID_12380
DNA repair and recombination proteins [BR:
pbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PACID_12380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DEDDh_C
GIY-YIG
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AFV89060
UniProt:
K7SIF6
LinkDB
All DBs
Position
complement(1351280..1353094)
Genome browser
AA seq
604 aa
AA seq
DB search
MSSMTAQDLQPSFDDLGTPLFDVTFCVVDLETTGGSGDDEITEIGAVKVRGGEVLGELAT
LVRPGSHIRGSVQMLTGITDEMVADAPSIGSVLPSWLEFSRGCVLVAHNARFDIGFLRRA
CDAHDRPWPGNTVLDTLALARSCLGRDEVHDHKLGTLARYFSATTSPSHRALDDARATVD
VMHGIIERVSGLGVTTLEDLLEVTHKVAPGRRARRTWADSLPESPGIYWFQADRPTAGQP
PEVLYVGTSVNVRRRVRQYFTASETRRRMDEMVRVATGVDALACATTLEAGVRELRMIDA
HSPRYNRRSRRQNAVNWVCLTDDRYPRLSVVRSTSRTDRTYWGPFTNRQEAADAGSLIAE
FAGIRQCSGTPASHPHGCPLAEMGRCVAPCLTGGGDDPSTLAQALAASPTGSSPRPPSTD
PYRGAVDRARQAMTVDVRPLIEAASTRIASLSRQERFEEAAALTSRARSCLRAGRRRARI
ASLADCAEIVAARPVDRTWEIHIVRRGRLAAAALSPAGQNPVPTIEAARATAETATAAAP
GIPACTVEEAELVAEWLETPGVRLVDIDGSWDWPVHCAAEDRALSDAVALASGRITDQEC
GRTA
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctccatgaccgcccaggatctccagccctccttcgatgatctcggcactccgctc
ttcgacgtcaccttctgcgtcgtcgatctggagaccaccggggggtcgggggacgatgag
atcaccgagatcggcgccgtgaaggtccgcggaggcgaggtgctcggcgagctggcgacc
ctcgtccgccccggaagccacatccgcggatccgtgcagatgctcaccggcatcaccgac
gagatggtcgcagacgccccgtcgatcggctccgtactgcccagctggctggagttcagc
cgcggatgcgtgctggtggcccacaacgcgcgattcgacatcggcttcctgagacgggcc
tgcgatgcccacgaccggccctggcccgggaacaccgtcctcgacaccctcgcgctggcc
cgctcctgcctcggccgcgacgaggtgcacgatcacaaactgggcaccctggcccgatac
ttctcggccaccacctcgccgtcccaccgggccctggacgacgcccgggccaccgtcgac
gtcatgcacgggatcatcgagcgggtcagcggcctgggcgtcaccaccctcgaggacctc
ctggaggtcacccacaaggtggcccccggccgccgcgcccgccgtacctgggccgactcc
ctgcccgagagccccggcatctactggttccaggcggaccgtcccaccgccggccaaccg
cccgaggtgctctacgtcggcacctcggtcaacgtccgccgccgcgtgaggcagtacttc
accgcctcggagacccgccgccggatggacgagatggtgagggtggccaccggcgtcgac
gccctggcctgcgcgacgaccctggaggccggcgtgcgcgaactgcgcatgatcgacgcc
cactccccccgctacaaccgcagatcacggcggcagaacgcggtgaactgggtctgcctc
accgacgaccggtacccgcggctgtcggtcgtcaggtcgaccagccgcaccgatcgcacc
tactggggccccttcaccaaccggcaggaggccgcggacgccgggagcctcatcgccgag
ttcgccggcatccgccagtgctccgggacccccgcgagccacccccacggctgccccctg
gccgagatggggcgctgcgtcgcgccctgtctgacgggaggaggggacgacccctccacg
ctcgctcaggcgctcgctgcctccccgaccgggtccagtccgcgaccgccctccaccgac
ccctacagaggtgccgtggaccgggcgcgccaggccatgaccgtggacgtccgccccctc
atcgaggcggcgtccacgcggatcgcatctctgtcccgccaggagcggttcgaggaggcc
gccgcgctcacgtccagagcacgctcctgcctgagggcgggacgccgacgggccaggatc
gcatccttggccgactgcgccgagatcgtcgcggcgcgcccggtggatcgcacctgggag
atccacatcgtccggcgcgggcgactcgcggccgccgcgctcagccccgccgggcagaac
ccggtaccgaccatcgaggccgcccgcgccaccgccgagacggccaccgccgccgcaccc
ggcatccccgcctgcaccgtcgaggaggccgagctggtcgcggagtggctggagaccccc
ggcgtccggctcgtcgacatcgacggcagctgggactggccggtgcactgcgcggccgag
gaccgggccctgtccgacgccgtcgccctggcgtccggcaggatcaccgatcaggagtgc
ggacgcaccgcctga
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