Acidipropionibacterium acidipropionici ATCC 4875: PACID_15270
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Entry
PACID_15270 CDS
T02345
Symbol
cnpD
Name
(GenBank) HDIG/KH domain-containing protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pbo
Acidipropionibacterium acidipropionici ATCC 4875
Pathway
pbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PACID_15270 (cnpD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbo03019
]
PACID_15270 (cnpD)
Messenger RNA biogenesis [BR:
pbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PACID_15270 (cnpD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_KhpA-B
AMP-binding_C
KH-I_KHDC4-BBP
Toxofilin-like_dom
KH_2
Sec61_beta
Motif
Other DBs
NCBI-ProteinID:
AFV89340
UniProt:
K7SJA7
LinkDB
All DBs
Position
1644648..1646156
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AA seq
502 aa
AA seq
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MRESLIRVSPQLVMISSWSVIAVVLAVALVLVVVGDILARRRSGAMLNASRRDVAEERER
LEQELERRRSDLETGLEDRRRTLEEDFERRRSALEESGRRRTESLDRRQAQVDRDRSQAA
DDLSRIAGMTVEQAHRELVEGAETDARAEAEALSRRIEEEARDQAEERARVVLATAIQRY
SGDITADSVVASVDLPSNDMKGRIIGREGRNIRCLEQVTGTTVIVDDTPGIVLVSCFDPI
RREIARLTLKDLVGDGRIHPARIEQAHQRAVRRIEALCLEAGEDALHQLGITDMAEGLRP
ILGSLKYRTSYGQDVLAHSVECGRLAGLMAAEIGADAAICRRAALLHDIGKSLTPGIEGS
HALVGAELARRYGESEEVVHAVAAHHNEVEARSVADVLTQAADAVSASRPGARRDSLESH
VRRLEEMESLATAHDGVAKAFAVQAGRDLRVMVVPEEVDDDAARHLARQIAHEVGDRVVV
PGQVKVTVIRETRAVEVTGAGD
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtgaatccctcatcagggtctcgccgcagctggtgatgatctcatcgtggtcggtc
atcgccgtcgtcctggccgtcgcactcgtcctcgtggtggtcggagacatcctggccaga
cgacgctcgggggcgatgctcaacgcatcccgacgcgacgtcgccgaggagcgggagcgc
ctcgaacaggagctcgaacggcgccgcagcgacctcgagaccggcctggaggaccgccgt
cgcaccctcgaggaggatttcgagcggcgccgcagcgccctggaggagtcgggacggcgt
cgtaccgagagtctcgaccgccggcaggcccaggtggacagggaccgctcccaggcggcc
gacgacctgtcgcggatcgccgggatgaccgtcgagcaggcccaccgggagctggtggag
ggcgccgagaccgatgcccgtgccgaggccgaggcgctgtcgcgcagaatcgaggaggag
gcccgcgatcaggccgaggagcgcgcccgggtggtcctggccacagccatccagaggtac
tccggggatatcaccgccgactcggtggtggcctcggtcgatctgccctccaatgacatg
aaggggcggatcatcggccgtgagggccgcaacatccgctgcctggaacaggtcaccgga
accaccgtcatcgtcgacgacacccccgggatcgtgctggtgagctgcttcgacccgata
cggcgggagatcgccaggctcaccctcaaggatctggtcggcgacggcaggatccatccg
gccaggatcgaacaggcccaccagcgcgcggtcaggaggatcgaggcgctctgcctggag
gccggcgaggacgccctccatcagctcggcatcaccgatatggccgaggggctgaggccc
atcctcggatctctgaagtaccgcacctcctacggtcaggacgtcctcgcccacagcgtc
gagtgcggccggctggccggactgatggccgccgagatcggcgcggacgccgcgatctgc
cgacgggccgcactgctccacgacatcgggaaatcgctgacccccggtatcgagggatcc
cacgccctggtcggcgccgaactggcccggcggtacggcgagtcagaggaggtcgtgcac
gccgtcgcggcccaccacaacgaggtggaggcccggtcggtggccgatgtgctcacccag
gccgccgacgccgtgtcggcgtcccggcccggggcccgccgggactccctggagagccac
gtgcgcagactggaggagatggagtccctggccaccgcccacgacggcgtcgccaaggcc
ttcgccgtccaggcggggcgggatctgcgggtcatggtggtgcccgaggaggtcgacgac
gacgcggccaggcacctcgcacgccagatcgcccacgaggtgggcgaccgggtggtggta
ccgggccaggtgaaggtcaccgtgatccgcgagacccgcgccgtggaggtcaccggggcg
ggggactga
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integrated database retrieval system
