Acidipropionibacterium acidipropionici ATCC 4875: PACID_20060
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Entry
PACID_20060 CDS
T02345
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pbo
Acidipropionibacterium acidipropionici ATCC 4875
Pathway
pbo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PACID_20060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbo03400
]
PACID_20060
Enzymes [BR:
pbo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PACID_20060
DNA repair and recombination proteins [BR:
pbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PACID_20060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFV89801
UniProt:
K7RTU0
LinkDB
All DBs
Position
2130916..2134218
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AA seq
1100 aa
AA seq
DB search
MITPVFDITDELPRGTTLLEASAGTGKTWTIASIVARAIASGRVRIGQVLLATFNRSAAR
ELRARVHARLVDCRDLLAGDRRPVDELDELLAGCDDATRAAMAARLDRAVDSFEDATITT
THEFSARMLAQLGVLADHDPTSRLLADPSVMADQVGRDLFLRTHLDDDRPPSAGPWLRLG
QEAAVSHPEVALGQAEATAGATARLAWARAVREESERRRRAAHQHTFDDLIADLAAALAD
PGRGPDAVAALTSQFRLVLVDEFQDTDPLQWQVLDRAFRGRVDLWLIGDPKQSIYAFRGA
DIHAYLDAVGAVDRVLALTVNRRADAPVVEGVSRIFGPALLGDPRIRLEPVSAWHRQSRI
SGPAIGSRRYDWSHPVQLRCIQQEGPSTLKPDEADRLVEEDLVNQVVMMLEGGSMWADED
GDRALEPRDIAVLVRTRRRGAQIQRALAGAGVPAVFTGADSIWSSPAAADLADLLDGLEQ
PDPPVVARLALSPLGGGTPGGLMAPGSAIRPDLAVQLGSWARRWPDLGVHGVIDEALHRP
GVLAGILAGRAGERYVTDLRQAGEIAGEAISTASPSAGRLGALRTPGRVADWIRDQRSAG
ADESPRRLETDRRAITIMTIHQAKGLGFPVVLLPDVARTWTPRDHGDPVIWHDGHRRLLD
LGGQGPAREKVWSAHREDEMAEDLRTLYVAMTRARSALRLWWTPVRRQHSGSSLHRLLAF
DHRAPATPGPGTGQIDPYRLTWLDGAVDVAPVPRQRPLRLASQGATTGSGAARTLSRAVD
ERWGRTSYSGLTAGIHGVSGPVDPEAGSDEPVDEDPPTLAPDPQAEEGLCAMPGGTAFGT
LVHAVLERVRPVAEGLDSDVAEQTGLLMASTPLPGVSASQLAEGLAAVMRTDLGALTSGR
RLCDIGTGNRLAELGFELSMASRSDRAATLADLAAALRDPGLVAPDDPLAGYGKVLAESA
AAERTLAGFLTGSIDAVLRLPDGRHLVIDYKTNRIPVPPGRPLRPDDYDAEAMARMMIDS
HYPLQAILYSAALHRMLASRLAGYDPSRHLGGVGYLFVRGMTGRRAPDSTMPTGVFTWYP
SAELVVRVSDLLSESRRGRA
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccccggtcttcgacatcaccgacgagcttccacggggcacgactcttctggag
gccagtgccggaaccgggaagacctggacgatcgcctccatcgtggccagggcgatcgcc
tccggccgggtgcggatcggtcaggtgctgctggccaccttcaaccggtcggcggcccgt
gagctgcgcgccagggtgcatgcccgcctcgtggactgccgcgacctgctcgccggcgac
cgtcggcccgtcgatgagctcgacgagcttctggcgggctgcgacgacgcgacccgcgca
gcgatggcggcccgcctcgaccgggccgtcgacagtttcgaggacgcgacgatcaccacg
acccacgagttctccgcacggatgctcgcgcagctgggcgtcctggccgaccacgacccc
acctcccggctgctggccgacccgtcggtgatggccgaccaggtgggacgggacctcttc
ctgcgcacccatctcgacgacgaccgtccaccgtcggccggcccgtggctgcggctgggc
caggaggcggcggtctcgcatcccgaggtggcgctggggcaggccgaggccaccgccggg
gcgacggcacggctggcgtgggcgcgcgcggtgcgcgaggagtccgagagacgccgcaga
gccgcgcaccagcacaccttcgacgatctcatcgccgacctggccgccgccctcgccgac
ccggggcgcggccccgacgcggtggcggcattgacctcgcagttccggctcgtgctggtc
gacgagttccaggacaccgacccgctgcagtggcaggtgctcgaccgggccttccgtgga
cgggtggacctgtggctcatcggcgacccgaagcagtccatctacgccttccggggagcc
gacatccacgcctatctggacgccgtcggagccgtcgaccgggtactggccctcaccgtc
aaccggcgtgccgacgcccccgtcgtcgagggggtctcacggatcttcggtccggccctg
ctcggcgatccgcgcatccgcctggaacccgtgtcggcatggcaccggcagtcgcggatc
agcggcccggcgatcggctctcgacgctacgactggtcccacccggtccagctgcggtgc
atccagcaggagggcccctcgaccctcaaacccgacgaggcggaccgactcgtggaggag
gacctggtcaatcaggtcgtcatgatgctggagggcggctcgatgtgggccgacgaggac
ggggaccgggccctggagccccgcgacatcgcggtcctggtgcgcacccgtcggcgcggc
gcccagatccagcgcgcactggcgggggccggcgtgccggccgtgttcaccggcgcggac
tcgatctggagttcgccggccgccgccgacctggccgacctgctggacgggctcgagcag
cccgatccgccggtggtcgcccgtctggcgctgtcccccctgggcggcggcacccccggc
ggactcatggctcccggctcagcgatacgcccggatcttgcggtgcagctgggctcctgg
gcccggcgctggcccgacctcggggtccacggggtcatcgacgaggccctccatcgtccc
ggagtgctggccgggatcctggccggccgggccggtgaacggtacgtcaccgaccttcgc
caggccggcgagatcgccggtgaggccatcagcaccgcctccccctccgcggggcgcctc
ggggcgctccgcaccccgggacgggtggccgactggatccgcgaccagcggtccgcgggg
gccgacgagtcgccgcggcgactggagaccgaccgccgggcgatcaccatcatgaccatc
caccaggccaaggggctcggcttcccggtggtgctgcttcccgacgtggcgcgcacctgg
accccccgcgatcacggagatccggtgatctggcacgacggccaccgtcgtctgctggat
ctgggtggccagggaccggcccgggagaaggtgtggagtgcccaccgcgaggacgagatg
gccgaggacctgcgcaccctctacgtggcgatgacccgcgcccgttcggccctgcggctg
tggtggacccccgtccgtcgtcagcattcaggatcctccctgcaccggctgctcgctttc
gatcatcgcgcccccgccaccccgggcccgggcaccgggcagatcgatccctaccggctc
acctggctggacggcgccgtggacgtggcgccggtcccccgccagcggccgctccgcctg
gcctcccagggtgcgacgacgggctccggggccgccaggaccctgagccgggccgtcgac
gagcgctggggccggacctcctactccggcctcaccgccgggatccacggcgtgtccggc
ccggtggacccggaggcgggctccgacgagcccgtggacgaggatcccccgaccctcgcc
ccggatcctcaggccgaggagggcctgtgcgcgatgcccgggggcaccgccttcggcacc
ctcgtccacgccgtgctggagcgagtccgcccggtcgccgaggggctcgactccgacgtc
gccgagcagaccgggctcctgatggcctcgaccccgctgcccggagtgtccgcctcgcag
ctggccgaggggctcgccgcggtgatgcggactgatctcggcgccctcacgtcggggcgg
cggctgtgcgacatcggcaccggcaaccggctcgccgaactcggcttcgaactgtcgatg
gcgtctcgctccgatcgggccgccaccctggccgacctggccgccgcgctgcgcgacccg
ggcctggtggcccccgacgatccgctggcgggctacgggaaggtactggccgagtccgcg
gccgccgagcggacgctggccggattcctcaccggttccatcgacgccgtgctgcgcctg
cccgacggccgacacctcgtcatcgactacaagaccaatcggatcccggtgcctcccggc
cggcccttgcggcccgacgactacgacgccgaggccatggcccggatgatgatcgactcg
cactatcccctccaggcgatcctgtacagcgcggcgctgcaccgcatgctggcctcccgg
ctggccggctacgacccctcccgccacctcggcggggtcggctacctgttcgtccgtggg
atgacgggccgccgggccccggactcgacgatgcccaccggggtgttcacctggtatccg
tcggccgagctcgtggtgcgggtcagcgatctgctgtcggaatcgaggaggggccgtgcc
tga
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