Paraburkholderia bonniea: QS306_02355
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Entry
QS306_02355 CDS
T09664
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pbon
Paraburkholderia bonniea
Pathway
pbon03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QS306_02355 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbon03021
]
QS306_02355 (rpoC)
03400 DNA repair and recombination proteins [BR:
pbon03400
]
QS306_02355 (rpoC)
Enzymes [BR:
pbon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QS306_02355 (rpoC)
Transcription machinery [BR:
pbon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QS306_02355 (rpoC)
DNA repair and recombination proteins [BR:
pbon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QS306_02355 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
WJF90536
LinkDB
All DBs
Position
1:552735..556973
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVMGVATTIKAAKKEVENQTAVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNILFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLSFTGVSEALRAYENK
EVELASRVNVRITEMVHNEDKSPGAPAFVPKISLYATTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVVDRDGKQTR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPESQETLYESGTLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGVVIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQAAKS
VRPQVKLLDASGEEVKIPGTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDAQVVNKGEMIVDGPADPHDILRLQGVEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIADDKRPATYDNVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSREL
SERERFDQIAAEESFEFGTPEVPAAEQQHSGE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagtccaacaacccgaagtttttgatgcgatc
aagatcggtctggcttcgccagacaagatccgttcgtggtctttcggtgaagtcaaaaag
cctgaaaccatcaattaccggacattcaagccggaacgtgatggtttgttctgcgcgaag
attttcgggccgatcaaagactacgaatgcctgtgcggtaagtacaagcgtctgaaacac
cgtggtgtgatctgtgagaagtgcggcgtcgaagtgacgctcgccaaggtgcggcgtgag
cggatgggccatattgaactggcctcgccggttgcgcacatctggtttctgaaatcgctg
ccgtcacgtctgggcatggtgctcgacatgacgctgcgtgatattgaacgtgttctgtac
ttcgaagcatatgttgtgatcgaaccggggatgacgccgctgaaagcacggcagatcatg
accgaagaggattactacaacaaggttgaagagtacggcgacgagttccgtgccgagatg
ggcgcggaaggcgtgcgtgaattgctgcgtgcgatcaatatcgatgaacaagtcgagatg
ctgcgcaccgagctcaaaaacacgggttcggaagcaaagatcaagaagtacgcgaagcgc
ctgaaggtgcttgaggcattccagcgctcgggcatcaagcccgactggatggtgctcgaa
gtgttgccagtcctgccgcctgaattgcggccgctggtaccgctcgatggcggccgtttt
gccacatccgacctgaatgacttgtatcgtcgcgtgattaaccggaacaaccggttgaag
cgtttgctcgagctgaaggcacctgaaatcatcgtccgtaatgaaaaacggatgttgcaa
gaggccgtcgattcattgctcgacaatggtcgtcgcggtaaggcgatgactggtgcgaac
aagcgtccgctgaaatcgctggccgacatgattaaaggtaagggcggccgtttccggcag
aacttgctgggcaagcgtgttgactattccggccggtcagtgattgtggtgggccctacg
ctgaagttgcatcagtgtggtctgccgaagctgatggcgcttgagctcttcaagccattc
atttttcacaagcttgaagtgatgggcgttgccacgaccatcaaggccgcgaaaaaagag
gtcgaaaatcagaccgctgtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtgatgctgaaccgtgctccgacactgcaccgccttggtatccaggcttttgagccggtg
ctgatcgaaggcaaggcaatccagctgcatccgctggtttgcgcggcgttcaacgccgac
ttcgatggtgaccagatggcggttcacgttccgctttcgcttgaagcgcaaatggaagca
cgcacgctgatgctggcatccaacaatattctgttcccggcgaacggcgatccgtcgatc
gtgccgtcgcaggatattgtgctcggcctgtactacgcgactcgtgaagcggtgaatgca
aagggcgaaggcctgtcgtttaccggtgtttcggaagcgctgcgtgcttacgagaacaag
gaagtcgaactggcctcgcgcgtcaacgtgcggatcacagaaatggtccataacgaagac
aagtcaccgggcgcaccggcatttgtgccgaagatctcgctgtatgcgacgacggttggc
cgtgcgattctgtcggaaattcttccgccagggctgccgttctccgtgttgaacaagccg
ttgaagaagaaagaaatttcacgcttgattaacactgcattccgcaagtgcggtctgcgc
gcaaccgtgattttcgcggatcagctgatgcagtcgggtttccgcctggccacgcgcgct
ggtatttccatctgtgtggatgacatgctcgtgccgccacagaaagaaaccatcgttggt
gatgcggcgaagaaggtgaaagagtacgaccgtcagtacatgtcgggtctggtcacatcg
caagagcgctataacaacgtggtcgatatctggtcggctacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgactgagccggtggttgatcgtgatggcaagcagacacgc
caggaatcgttcaactcgatctacatgatggccgactctggcgcacgtggctccgcagtg
cagattcgtcagctggcaggtatgcgtggcctgatggccaagcctgacggctcgatcatc
gagacgccgattaccgcgaacttccgtgaaggcctgaacgtgttgcagtacttcatctcg
actcacggtgcacgtaagggtctggctgatacggcattgaagacggcgaactcgggttac
ctgacacgtcgtctcgtcgacgtgactcaggatctggtggtcgttgaagatgattgcggc
acttcaaacggcgtggcgatgaaagcgctggttgaaggtggtgaagtcgttgaggcactg
cgtgaccggattctcggccgtgtagctgttgctgatgtggtgaatccggaatcacaggaa
acgctgtatgaatcgggcactttgctcgatgaagatgcggtcgaagagattgagcgtctg
ggcatcgacgaagtgcgcgtgcgcacaccgctgacttgcgaaacgcgctacggcctgtgc
gccgcgtgttatggccgggatcttggccgtggctcatcggtgaatgttggcgaggcagtg
ggtgtgattgcggcgcagtcgattggtgagcctggcacgcagcttacgatgcgtaccttc
cacatcggcggtgcggcgtcgcgtgcagcggtggcttcgtcggttgaagccaagtccaac
ggtacggttcgtttcaccgcaacgatgcgttatgtgacgaatgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaagcgatgattacggacgaccacggccgcgaacgtgaacgt
cacaaagtgccttacggtgccacgctgctgcagcttgatggcgtcgtcatcaaggcaggc
acgcagttggcgacgtgggacccgatgacgcgtccgatcatcactgagtatggtggtacg
gtgaagttcgaaaacgtcgaagaaggcgtgaccgttgccaagcaaatcgacgatgtgacg
gggctttcgactctggttgtaatcgacgtcaagcgtcgcgggtcacaggccgcgaagagc
gtgcgtccgcaggtcaaattgctggatgcaagcggcgaagaagtgaagatcccgggtacc
gagcattcggtgcagattggcttccaggttggcgcactgattaccgtgaaagacggtcag
caggtgcaggtcggtgaagtgctcgcacgtattccaaccgagtcgcaaaagacgcgggac
attaccggtggtctgccgcgtgtggcggaactcttcgaagcacgttcaccgaaggacgcc
ggcattctcgcggaagtcacaggcacgacgtcgtttggtaaggatacgaagggcaagcag
cgtcttgttatcacggatctcgaaggtaatcagcacgagttcctgatagcgaaggaaaag
caggttttggttcacgatgctcaggttgtcaacaagggcgaaatgatcgtggacgggcca
gcagatccgcacgatattctgcgtttgcagggtgtcgaggcgctgtcacgttacatcgtg
gacgaggtgcaggacgtgtaccgcttgcagggcgtgaagatcaacgacaagcacattgaa
gtaatcgtgcgtcagatgctgcgtcgtgttcaaattaccgacaacggtgacacgcgtttc
atcccgggtgaacaagtcgagcgttcggacatgcttgatgagaacgaccggatgatcgca
gatgacaagcgtccggccacctacgacaacgtgctgttgggtatcacgaaggcatcgctg
tcgaccgattcgttcatctctgcggcgtcattccaggaaacgactcgcgtgctgaccgaa
gcggcgatcatgggcaagcgtgatgatctgcgcgggctgaaagaaaacgtgatcgttggt
cgtctgattccggctggtacgggcctcgcattccacaaggctcgcaagagccgggagttg
tcggagcgcgaacgttttgaccagatcgcagccgaagagtcttttgaattcggtactccg
gaagttccggcagccgagcagcaacactcaggcgagtaa
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