Paraburkholderia bonniea: QS306_03490
Help
Entry
QS306_03490 CDS
T09664
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbon
Paraburkholderia bonniea
Pathway
pbon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QS306_03490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbon03019
]
QS306_03490
Enzymes [BR:
pbon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QS306_03490
Messenger RNA biogenesis [BR:
pbon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QS306_03490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Sacchrp_dh_NADP
P-loop_SecA
HI1480
Motif
Other DBs
NCBI-ProteinID:
WJF90741
LinkDB
All DBs
Position
1:complement(791376..792860)
Genome browser
AA seq
494 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTIPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLTTGAAPTTASGKRPVRALILTPTRELAAQVEESVRLYGKYLKLKSTVMFGGVGINPQ
IDALRRGVDIVVATPGRLLDHMQQKTIDLSQLEILVLDEADRMLDMGFIHDIKRVLAKLP
PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTH
LIQQHKWFQVLVFTRTKHGANRLAEQLAKDGITALAIHGNKSQSARTRALAEFKDGTLQV
LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLK
DIERLIKRPVPQEVIAGFEPDPNAKPEPILRRGQGGGGGGGGRQPRQGQGGGGNAAPRSG
QRPGAQPVKSAAPRPAKAPAQVRQDNPRHETTRHHGKPGPATHDNGAAGGTSRKSPGALP
GGGRTPGRGGNRGR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaacccttggtccgcgctgttcatgagctcggc
tacaccatccctacccccatccagacccaagccattccggccgtgctcaacggcggcgat
ctgcttgctggcgcgcaaaccggcacaggcaagaccgctggcttcacgctgcccatcctg
caacgcttgaccaccggggccgcgcccaccaccgcatcgggcaaacgccccgtgcgcgcg
ctgatcctcacgcccacgcgtgaacttgccgcccaggtggaagaaagcgtgcggctctac
ggcaaatatctgaagctgaaatcgaccgtgatgttcggcggcgttggcatcaatccgcag
atcgacgcgctacggcgaggcgtcgatattgtcgtggccacgccaggccgcctgctagat
cacatgcagcaaaaaaccattgatctgtcacaactcgaaattctggtgctcgacgaagcc
gaccgcatgctcgacatgggcttcattcacgacatcaagcgcgtgctggccaagctccca
cccaagcggcaaaacctgctgttttcggccacgttctccgacgaaatcaaaacgctcgcc
gacaatctgctcgactcacccgcgctgatcgaagtcgctcgccgcaacaccaccgctgaa
accgtcgcgcaaaaaattcaccccgtcgaccgcgaccgcaaacgcgaattgctgacgcac
ctgatccagcagcacaagtggttccaggtactggtgttcacccgcaccaagcacggcgca
aaccgtctggcggagcaactggcgaaggacggcatcacagcgctggcgattcacggcaac
aagagccagtcggcccgcacacgagcgctggctgagttcaaggacggcacgctgcaagtg
ctagtggccaccgatatcgccgcgcgcggaatcgacatcgaccagttgccgcacgtggtc
aacttcgatttgccgaatgtgccggaagactatgtgcaccggatcggccgcacaggccgt
gcaggggcaacgggcgaagcggtatcgctggtgtgcgtcgatgagctgcaactgcttaag
gacatcgaacggttaatcaaacgcccggtgccacaagaagtcatcgcgggctttgagcca
gatccgaatgccaagcctgaacccatcctgcgccgtggccagggtggcggcggtggcggc
ggtggtcgtcaaccgcgtcaggggcaaggtggtggtggcaacgctgcgccacgttcgggc
cagcgcccaggtgcgcaaccggtgaaatccgctgcaccgcgaccagctaaagctcctgct
caagttcgccaggacaacccacggcacgaaaccactcggcatcacggcaagcctggcccg
gcaacccatgacaacggcgcggcaggaggcacgtcacgcaagtccccaggcgcgctgcca
ggaggcggccggacacccggacgcggtggcaaccgcggacgttga
DBGET
integrated database retrieval system
