Paraburkholderia bonniea: QS306_04940
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Entry
QS306_04940 CDS
T09664
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
pbon
Paraburkholderia bonniea
Pathway
pbon00541
Biosynthesis of various nucleotide sugars
pbon01100
Metabolic pathways
pbon01250
Biosynthesis of nucleotide sugars
Module
pbon_M00064
ADP-L-glycero-D-manno-heptose biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
pbon00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
QS306_04940 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pbon01005
]
QS306_04940 (rfaD)
Enzymes [BR:
pbon01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
QS306_04940 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
pbon01005
]
Core region
QS306_04940 (rfaD)
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Ortholog
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
Polysacc_synt_2
NAD_binding_10
KR
NmrA
DapB_N
adh_short
Motif
Other DBs
NCBI-ProteinID:
WJF91003
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All DBs
Position
1:1133288..1134280
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AA seq
330 aa
AA seq
DB search
MTIIVTGAAGFIGSNLVKALNQRGHSRIIAVDNLTRADKFHNLVDCEIEDYLDKSEFIER
FTRGDFGKVQAVFHEGACSDTMETDGRYMMDNNFRYSRAVLDTCLAQGSQFLYASSAAIY
GGSERFVEDREVERPLNVYGYSKFLFDQVVRRLIPGAASQIAGFRYFNVYGPRETHKGRM
ASVAFHNFNQFRAEGKVKLFGEYNGYAAGQQTRDFVSVEDVTKVNLFFFDNPGKSGIFNL
GSGRAQPFNDIALSVVNTLRALNNEPALSLEQQVQQGLIEYVPFPDALRGKYQCFTQADL
GRLRAAGYEAPFLSVQEGVGQYVRWLSGQL
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgactattatcgtgaccggcgccgctggtttcatcggcagcaatcttgtcaaggcgctc
aatcaacgcggccattcgcgcatcattgctgttgataacctcacccgcgcagacaagttt
cacaatctcgtcgactgcgagattgaggactatctcgacaagagcgaatttatcgagcgc
tttacccggggcgatttcggcaaagtacaagcggtgtttcatgaaggcgcgtgctcggac
acgatggaaaccgatggccgctacatgatggacaacaactttcgctatagccgtgctgtg
ctggatacctgcctcgcgcagggcagccagtttctgtatgcgtcgtcggcggcgatttat
ggcggctcggagcggtttgtcgaagatcgtgaagtggagcggccgctgaatgtctatggc
tattcgaaatttttattcgaccaggtggtgcgacgcctgattccaggtgccgctagccag
attgctggttttcgctatttcaacgtgtacggtccgcgtgaaacgcataaaggcaggatg
gcttcggttgcgtttcacaacttcaaccagttccgtgccgaaggcaaggtcaaactgttt
ggcgagtacaacggctatgctgcaggccagcagacgcgcgatttcgtctcggtcgaggac
gtgacgaaggtcaacttgttcttcttcgacaatcccggcaaatcaggcatcttcaatctc
ggcagtggccgggcgcagccgttcaacgatattgcgctgagcgtcgtgaatacgctgcgt
gcactcaataacgagcccgccctgtcgcttgaacagcaggtgcagcaagggctgatcgag
tacgttccttttcctgatgcgctgcgtggcaagtatcagtgtttcactcaggcagacttg
ggccgcctgcgcgcggcgggctatgaggctccgtttctgagcgtgcaggaaggtgttggc
cagtacgtgcgctggctatctggccagctataa
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