Paraburkholderia bonniea: QS306_05665
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Entry
QS306_05665 CDS
T09664
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pbon
Paraburkholderia bonniea
Brite
KEGG Orthology (KO) [BR:
pbon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbon03019
]
QS306_05665 (hrpA)
Enzymes [BR:
pbon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QS306_05665 (hrpA)
Messenger RNA biogenesis [BR:
pbon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QS306_05665 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
NACHT
nSTAND3
T2SSE
AAA_30
AAA_23
PhoH
Motif
Other DBs
NCBI-ProteinID:
WJF91128
LinkDB
All DBs
Position
1:1287708..1291874
Genome browser
AA seq
1388 aa
AA seq
DB search
MSNVPKSPAPASPNLPPDARQRKPGPGGSAASSPPVSRPPRQPRPTRETTASRVPHPPRA
PRVAVVPNPVPPITFPEALPVSGRRDEIAQAIAQHQVVIVCGETGSGKTTQLPKICLALG
RGLGAGGTGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLAAGASVKLMT
DGILLAETQTDPLLRAYDTLIIDEAHERSLNIDFLLGYLREILSKRPDLKLIVTSATIDA
ERFAQHFSQAGKPAPVIEVSGRLYPVEIRYRPVVEDSPAVKAAEGSASRDRARPAQRAPG
KDRDLMEAIVDAVDELCRVGPGDVLVFLPGEREIRDAAEALRKHHPAHTEILPLFARLSA
ADQERVFRASNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQVEPIA
QAAANQRAGRCGRVADGVCIRLYEENDFQARARFADPEILRSSLAAVILRMKSLHLSAIE
TFPFIEPPPGRAIADGYQLLNELGAMDDSNALTPLGRELARLPLDPRVGRMILAARDQQA
LREVLIIASALSVQDPRDRPVEAQEQADQAHRRFADERSEFLQWLKIWAWFDEAIAHKKS
NRQLGEACRANFLSQLRLREWRDVHAQLLTVVREHGWRLNDTEATFEQIHLALLTGLLGN
IGLKADDEPYYLGARGIKFYLWPGSALVKKAGRWVIAAELVETSRLYARCLAKIEPEWLE
RVGGHLLKKSLSEPHWEKRAAQVSAYERAVLHGLPVYHRRRVSFGRQDPVRARELFIRGA
LVEGEFDTKLPFFAHNRKLLAEIEQLEHKSRRQDVLVDDELIFAFYDQALPPGIYTGAAF
ERWYRDEIVKSGQPEGRSRLLFLSRDDLMRHEAAGVTTDLFPKRMTMAGVEMGLTYHFEP
GSPRDGVTLAVPLYALNQVDTRRCEWLVTGMLKEKTQLLLKSLPQKLRRHCVPLPEYAAG
FVERMGGARFGAGGLLETLIADIREQTQVALKSSDFKLETLPAHLFMNFKVIDEHGRQLA
MGRNLAQLRAELGGQAQQHFQKITTGAAGLALADAALVLRPGESVAGGMAGTAGKGGVPV
TAGPGRRQSEPKTIAPAATGEPSTALYEKLTTWSFGKLPELLEIRRGGQTLYGYPALVDR
GAHCDVEVFDSPDEAARIHRAGLRRLFALQLKEPIRYLEKNLPGLREMALQFMPRASQEE
LRDQLVDTALDRACLQAPLPDDDASFALRRDEGRSRLTLLAQEIARLGGQILNEYAALGK
KLVQAKPYAAAHADLQNQLDGLLGKRFIIDTPYAQLAHFPRYLKGIALRIDKLKADPARD
ARQFAEFQPLLQQYQRALAQRGGVLDARLGEFRWLLEELRISLFAQELRTPMPVSVKRMH
KVWESMQR
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacccaaaagtcccgctccggcgagcccgaatctgccgcctgatgcccga
caacgcaagcctggccctggtggctcggccgcgagttcccctccggtgtcacgtcctccc
cgtcagcctcgtcctacccgcgaaaccaccgcgtcgcgtgtgccgcatccgccacgtgca
ccgcgcgtggccgtggtgcctaatccggtgccgccgattacctttcctgaggcactgccg
gtctctgggcggcgcgacgagatcgcgcaggcgattgcgcagcaccaggtggtgatcgtg
tgcggcgaaaccggctcaggtaaaaccacgcagttgccgaagatctgtctcgcgctcggg
cgcgggctgggtgcgggtggcaccgggctgatcggccatacccagccgcgccgtatcgcg
gcttcggcaaccgggcgtcgtatcgcagaagaactgggaacgccgtttggcgaggtggtc
ggctacaaggtgcgctttaccgacaacctggcagcgggtgcctcggtcaagctgatgaca
gatggcatcttgctcgccgaaactcaaacggaccccctgctgcgcgcctatgacacgctc
atcatcgacgaagcccacgagcgcagtctcaacattgattttctgctgggctatctgcgg
gaaattctgtctaagcgacccgatctgaaactgatcgtcacctccgcgacgattgatgcc
gagcgttttgcccagcacttttcccaggcgggtaagcccgctccggtgatcgaagtcagc
gggcgtttgtatccagtggaaatccgctatcgcccggtggtggaagatagcccagccgtg
aaggctgccgagggttccgcgtcgcgcgaccgggcccggcccgcgcagcgcgcgccgggc
aaagaccgtgacttgatggaagcgattgtcgatgcggtggatgagctgtgccgggtgggc
ccgggcgatgtactagtgttcttgcccggtgagcgggaaattcgtgacgcagctgaagcg
ctgcgcaagcatcatccggcgcatacggagatcctgccgctctttgcccgcttgtcggcg
gctgaccaggagcgcgtgttccgggcctcgaatgcgcgccgcatcgtgctggcgactaac
gtcgctgaaacctcgctgacggtgccaggcatccgttatgtggtggataccgggctggca
cgggtcaagcgttactcgtatcgcaacaaggtggagcaactgcaggtcgagccgattgcc
caggcggcggcaaaccagcgcgcgggccgttgcggccgggtggcggatggggtgtgcatc
cggctgtatgaagagaatgattttcaggcgcgggcgcgctttgccgatccggaaattttg
cgctcgtcgctggcggcggtgattttgcgcatgaagtcgctccatctgagcgcaatcgaa
acctttccctttattgagccgcctcctggccgggcgattgccgacggctatcagttgctc
aatgaactcggcgcgatggatgacagcaacgcgctcacgccgctcgggcgtgagctggcg
cgcctgccgctggaccctcgcgttgggcggatgattctcgccgcgcgcgatcagcaagcg
ctgcgcgaagtgctgatcattgcgagcgcgctgtcggtccaggacccgcgcgaccggccc
gtcgaggctcaggagcaagccgatcaggcgcatcgccgttttgccgacgagcgttcagag
ttcctgcaatggctgaagatctgggcatggttcgacgaagcgattgcgcataagaaatcc
aaccgccaactgggcgaagcctgccgcgcgaacttcctgtcccagctgcgtttgcgcgaa
tggcgtgatgtgcatgcgcaattgctgacggtggtgcgcgagcatggctggcggctgaac
gataccgaagcgaccttcgagcagattcacctggcgctgttgacggggctgctgggcaat
atcggtttaaaggcggatgacgagccgtattacctcggcgctcgtggcatcaagttttat
ctctggcccggctcggcgctggtgaaaaaagccgggcgctgggtgatcgcggcggagctg
gtcgagaccagccgcctgtatgcgcgctgcctcgccaaaatcgaaccggaatggcttgag
cgggtgggcgggcatttgctcaaaaaatcgctgtccgagccgcactgggaaaagcgcgcg
gcgcaggtgtcggcgtatgagcgggcggtgctgcacggcttgccggtgtatcaccggcgg
cgtgtcagttttggccgccaggacccggtgcgggcgcgcgagctgtttattcgcggggcg
ctagtggagggcgaattcgacacgaagctgccgttcttcgcgcataaccgcaagctgcta
gccgagatcgagcagcttgaacacaagtcgcggcgtcaggatgtgctggtcgacgatgaa
ttgatcttcgctttttatgaccaggcattgccgccagggatctataccggcgcagcgttc
gagcgctggtaccgggatgaaatagtgaagagtgggcagccggaggggcgttcgcgtttg
ctgtttttgtcgcgtgatgacttgatgcggcacgaggccgccggggtgaccaccgatctc
tttccgaagcgcatgacgatggcgggcgtcgagatggggctgacctatcacttcgagcca
ggctcgccgcgcgatggcgtcacgctggccgtgccgctgtatgcgctcaaccaggtcgat
acccggcgttgcgagtggctggtcaccggcatgctgaaagaaaagacccaattgctgctg
aagtcgctgccgcaaaaactgcgacgccactgcgtgccgttgccggagtatgccgcgggc
tttgtcgagcgcatgggcggggcgcggtttggcgcgggtggcttgctcgaaaccttgatc
gccgatatccgcgagcagacccaggtcgcgctgaaatcatcggacttcaagctggaaaca
ctgcccgcgcacttgttcatgaacttcaaggtgattgacgagcatggccggcaactggcg
atgggccgcaatctggcgcaactgcgcgcagagctgggcggccaggcgcagcagcatttc
cagaaaataaccaccggcgcggcgggcctggcactcgccgatgcggcgctggtgctgcgg
cctggcgaaagcgtggcgggcggcatggcgggcacggcaggcaagggtggtgtgccggtg
acggccgggccggggcggcgtcagtctgagccgaaaaccatcgcgccagccgcgacgggc
gagccctcaactgcgctttacgaaaagctcacgacgtggagttttggcaagttgccggag
ctgctggaaattcgccgtggcggccagacgctctatggttatccggcgctagtggatcgg
ggggcgcattgcgacgtcgaggtgtttgattcgcccgatgaagcggcgcggattcaccgt
gccgggttgcgccggctgtttgcgttgcaactgaaagagccgatccgctacctggaaaaa
aacttgcccgggctgcgcgaaatggcgttgcagttcatgccgcgcgccagccaggaagaa
ctgcgtgaccaactggtggataccgcgctggatcgggcctgcttgcaggcaccgttgcct
gacgatgacgccagctttgccctgcgccgtgacgaagggcgtagccgtttgaccttgctg
gcgcaggaaattgcccggctgggcggacagattctcaacgaatacgccgcgctagggaaa
aagctggttcaggccaagccctatgccgcagcgcatgcggatttgcaaaatcaactggat
gggttgctgggtaagcgcttcatcatcgacacgccgtatgcgcagctggcgcatttcccg
cgctatctgaagggcattgcgcttcgtatcgacaagctgaaagctgatcctgcccgcgat
gctcgccagttcgccgagtttcagccgctgctgcagcagtatcagcgcgcgctggcgcag
cgcggtggggtgctggatgcccgtctgggggagtttcgctggctactggaagaactgcgg
atctcgctcttcgctcaagagttgcgcacgccgatgccggtgtcggtcaagcggatgcac
aaggtgtgggagtcgatgcagcgttga
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