Paraburkholderia bonniea: QS306_07615
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Entry
QS306_07615 CDS
T09664
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbon
Paraburkholderia bonniea
Pathway
pbon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QS306_07615 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbon03400
]
QS306_07615 (mfd)
Enzymes [BR:
pbon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QS306_07615 (mfd)
DNA repair and recombination proteins [BR:
pbon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QS306_07615 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
FAN1_HTH
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WJF89018
LinkDB
All DBs
Position
1:complement(1735691..1739185)
Genome browser
AA seq
1164 aa
AA seq
DB search
MSDIAASSQSPSPSSLSTGTATAPVALVKTGQRFAFDGAFGSSDALLIARYHLAYRAQAP
LLAVICANAADAQRLSQEISFFAPEARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLG
EERCDILLVPATTALYRMPPPSFMAAYTFSFGQGERLNEARFKAQLTLAGYEHVSQVVRP
GEYCVRGSLIDLFPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPF
DDAARTAFRSRWREVFEGDPSRATIYKDIGNGVPSAGIEYYLPLFFDDTATLFHYLPAGA
QLVFTGDMDTAIRRFTADTRQRYNFLSHDRDRPILEPQRLFLSDEDFFTLAKPFARLVLP
SNSSGWATPLPALALDRHADDPLAALRAYLATSPNRVLFLAESAGRRETIAQLLTEHQLR
PASSDSYEDWLTSSAPFALGVAPLATGFALPAEGLALITETELYGPLARRSGRRRQEQAS
NVDSMVRDLSELKPGDPVVHAQHGIGRYLGLVTMDLGEGETEFLHLEYSASSKLYVPVAQ
LHVISRYSGADPDSAPLHALGSGQWDKARRKAAAQIRDTAAELLNLYARRAAREGHAFTL
DARDYAKFAGSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIA
VMGGKQVALLSPTTLLAEQHTQTFSDRFSDWPVRIAELSRFKSTKEINASIQQINEGGID
IVIGTHKLLSADVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGM
ALEGLRDFSVIATAPQKRLAIKTFLRREEDSVIREAMLRELKRGGQVYFLHNEVETIENR
RAMLEALVPEARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILI
HRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQGQRRLDAIQQMEELGAGFYL
AMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKEGREPDLNAPLAATTEIN
LHTPAILPADYCGDVQERLSLYKRLASCEHDDLIDSIHEELIDRFGKLPQPAQALVETHR
LRLLAKPLGLSKIDAGESVIGMQFIPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIETRSP
DLAIRVATVKETLRALGAPVRKTS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacatcgccgcttcatcgcagtccccgtctccctcgtctctttcgaccggcact
gccaccgcgccggtcgcactcgtcaaaacgggccagcgttttgcttttgatggcgcattc
ggttcgtccgatgcgctactgatcgcccgctatcacctggcctatcgggcacaagcgccg
ctgctggcagtgatctgcgcgaacgccgccgatgcccagcggctttcgcaggaaatcagt
tttttcgcccccgaagcgcgggtgcggttgctgcccgactgggaaacactgccctacgac
accttctcacctcatcaggatctcgtgtcagagcggctcgccaccctgcacgatctgggt
gaagagcgctgcgacatcctgctggtgccggcaaccacagcgctgtaccgcatgccgccg
ccgtcattcatggcggcttacacgttctcgtttggccagggcgagcggctgaatgaagcg
cgcttcaaggcgcaactgacgctcgctggctatgagcatgtgagccaggtggtgcgtcct
ggtgagtactgcgtgcgtggctcgctgattgacctctttccgatgggctcgccgttgccg
tatcgcatcgacctgttcgacgatcaggtcgattccatccgggccttcgatccggatacc
cagcgcagcctgtatcccgtgcgcgacgtgcgcttgctgccgggccgcgagttcccgttt
gatgatgccgcccggacagcgtttcgcagccgctggcgtgaggtgttcgagggcgacccc
agccgcgcgacgatctacaaggacatcggcaatggcgtcccgtcggctggcatcgaatat
tatttgccgctttttttcgacgataccgccacgctgtttcactatctgcccgccggagct
caactggtgtttaccggcgacatggacaccgcgatccggcgtttcacggccgatacccgg
cagcgctataactttttgtctcatgaccgcgaccggcccattcttgagccgcaacggctg
tttctttcagacgaagatttttttacgctggccaaaccgtttgctcgccttgtactcccc
tctaacagcagcggctgggccacgccgctgccggcactcgcgctcgaccgccacgctgac
gatccactcgcagcgttacgcgcttatctggctacctcgccaaatcgcgtgctgtttctg
gctgaatcagcagggcgccgtgaaaccatcgcccaattgctcaccgagcatcagctacgg
cctgcatcaagcgatagctacgaagactggctgacctccagcgcaccgtttgcgctcggc
gtggcaccgctcgccaccgggtttgcgttgcccgccgaaggtcttgcgctcatcaccgaa
accgagctttacgggccgctagcgcgccgctcaggacgacggcggcaagagcaggccagc
aacgtcgactcgatggtgcgcgatctctccgaactgaagccgggtgatccggtcgtgcat
gcgcagcatggcattggccgctatctgggcctggtgacgatggatctcggcgaaggcgaa
accgaattcctgcatcttgagtattccgccagcagcaaactgtatgtccccgtggcgcag
ttgcatgtcatttcgcgttacagcggtgccgaccccgacagcgcgccactgcatgcgctc
ggctctggccagtgggacaaggcacggcgcaaggccgccgcgcagatccgcgataccgcc
gctgaactcctgaacctgtacgcccgccgggcagcgcgtgaaggtcacgctttcacacta
gacgcgcgcgattacgcgaaattcgccggtagtttcggctttgaggaaacccccgaccag
gccgcggccattgcggccgtcattggcgacatgaccagcggcaagcccatggaccggctg
gtttgcggcgacgtcggctttggcaagaccgaagtcgcgctgcgtgcagcctttatcgcg
gtcatgggtggcaagcaagttgcgctgttgtcgcccaccaccctgctcgcggaacagcac
acacaaaccttctccgaccgtttctccgattggccagtgcgcatcgctgagttatcgcgc
tttaagtcaaccaaagaaatcaacgcgtcgatccagcagattaacgaaggcggcatagat
atcgtgatcggcacgcacaagctgctgtcagccgatgttcagttcaagcggctgggtctg
gtcatcattgacgaagagcatcgctttggcgtgcggcagaaagaagcgctcaaggccttg
cgggccgaagtggatgtgctgacgctcaccgccacaccgattccgcgcacgctgggtatg
gcgctcgaaggattgcgcgacttttcggtcatcgccaccgcgccgcaaaagcgcctggca
atcaaaaccttcctgcgccgcgaagaagacagcgtgatccgcgaggccatgctgcgtgag
ctcaaacgcggcggccaggtctattttctgcataacgaagttgaaaccatcgaaaaccgc
cgggcgatgctcgaagcgctggttcccgaagcgcgcatcgccgtggcccatggccagatg
cacgagcgcgaactggaacgtgtgatgcgcgactttgtggctcagcgcgccaacgtcctg
ctttgcaccacgatcatcgaaaccggcatcgacgtgcccagcgccaacacgatcctgatt
catcgcgcggacaaatttggcctcgcgcagttgcaccagttgcgtggccgcgtcgggcgc
tcacatcaccaggcgtattcgtacctgctggtgcatgacccgcaaggcctgaccaagcag
gggcagcggcgtctcgatgccatccagcagatggaagagctgggcgcgggcttttatctg
gcaatgcatgacctcgaaattcgcggcacgggcgaggtgctgggcgacaagcagtcgggc
gaaattcacgagatcggttttcagctttacaccgacatgctcaacgatgccgtcaaagca
ctcaaggaaggccgtgaacccgatctgaatgcgcctctggccgctaccaccgagatcaac
ctgcacacccctgcgatcttgcctgccgactactgcggtgatgtccaggaaaggctatcg
ctatacaagcggctggcaagctgcgagcacgatgacctgatcgacagcattcacgaagaa
ctgatcgaccgcttcggcaagctgccgcagccggcccaggcgctggtcgaaacgcaccgg
ctacgactgctcgccaaaccgctgggcttgtcgaagatcgacgcaggcgaaagcgtgatc
ggcatgcagttcattccgaatccgcccattgatgcgatgcgcattatcgaaatggtgcaa
aaacacaagcacatcaagctcgcgggccaggacaagctgcgtatcgaaacgcgtagcccc
gatctggcgatacgggtcgcaacggtcaaggaaacgctgcgcgcgctcggtgcgcccgtg
cgcaaaaccagttga
DBGET
integrated database retrieval system
