Paraburkholderia bonniea: QS306_10300
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Entry
QS306_10300 CDS
T09664
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbon
Paraburkholderia bonniea
Pathway
pbon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QS306_10300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbon03019
]
QS306_10300
03009 Ribosome biogenesis [BR:
pbon03009
]
QS306_10300
Enzymes [BR:
pbon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QS306_10300
Messenger RNA biogenesis [BR:
pbon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QS306_10300
Ribosome biogenesis [BR:
pbon03009
]
Prokaryotic type
rRNA processing factors
QS306_10300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
WJF89505
LinkDB
All DBs
Position
1:2359817..2362966
Genome browser
AA seq
1049 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMGQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEGASQSGQSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AVDVNSARSTKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESPKSQREVE
QRLKDALRHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRIEEVKPKQEAVVKGITPEK
PAPGAPVRPAPVAARATTPAGGGFIGWLKNLFGIPSEAPAPATPATTGKPSRPARERTER
GGERGRNRRGTGGREAAGRAEGTPSGTRQGQATAPRREERETREGREPREGREPREGREP
REGREPREGREPREGREPREGREPREGREPREGREPREGREPREGREPRAGREPRENRGE
RGQDRTDANETAPRGERRERGERGERNDRRRQPETTEALNEENSLQQTPAEMAENAILAD
QEAIARDGDERRRRRRGRRGGRRERDEEGGEQTAHFSDAEDSTPRAQELQPQQSYEKASP
AAPEPAVEVARASVTQAAPAPTLQQVSTAPAPAPFVPAAVVPAPVVPVVVETSAAPVPQP
IPQPVVTEVVKPQPTALVMVETVAAPVPAPAPIAVETASVAPVAPVQVQTTAPAPAPAPV
PVAAVASPVPPPAPAAAPASAPAGLSAEALQPVLESAGLVWVNTDASKLRAAQEASAQIV
RPSRAPRERKRAAPAENAPMQQVETGKNS
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgtttaatgcgacgcagcaagaagaattgcgcgtcgcaattgttgat
ggccagaagcttatcgacattgatatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atctacaaaggaatcgtgacgcgcatcgagccttcgctcgaagcctgtttcgtcaactac
ggcgaagatcgtcatggttttctccccttcaaggaagtagcccgccagtatttccgtgat
ggcgttgacatgcgctcggcgcgcattcaggacgcattgcgcgaagggcaggaactcatc
gttcaggtcgaaaaagaagagcgcggcaacaagggcgcggccctcaccacgttcatttcg
ctcgctggccgttatctggtcctgatgccgaacaacccacgtggtggtggtgtttcacgt
cgtatcgagggcgacgaccgccaggaattgcgcgaaaccatgggccagctgcaattgccc
gaaggcatgagcatcatcgcgcgcaccgcgggcattggccgcagcgccgaagaactgcag
tgggacctgaactacctgatgcaattgtggcgtgcgatcgaaggcgcgtcacaaagcggc
cagtccggccagccgatgctgatttatctcgaatccagcctcgtgatccgagcgattcgt
gactatttccagccggatatcggcgaaatcctgatcgacaccaccgaaatccacgaccag
gctcgcgccttcatggatatcgtcatgccggacaacgtcggcaaagtgaagcgctatcac
gacgacgtgccgcttttctcccggttccagatcgaacaccagatcgaaaccgcctactcg
cgcaccgtgcccctgccgtctggcggcgctatcgtgatcgaccacacggaagcactggtc
gcagtcgatgtgaactcggcccgctccaccaaaggtgccgacatcgaagaaacggcggcg
cgcaccaaccttgaagcagccgacgaagtcgcccgccagttgcgcctgcgcgatctgggt
gggctgatcgtgattgacttcatcgacatggagtcgcccaaaagccagcgcgaagtcgag
caacgcctgaaagacgccctccggcatgaccgggcccgggtccagatgggcaagatttcg
cgcttcgggctgatggaactgtcacgtcagcgcctgcgtcccgccctgtctgaaggtagc
cacgtcacttgccctcgttgcaacggcacgggccacatccgcgacaccgaatcatccgcg
ctgcaagtgctacggatcattcaagaagaagcaatgaaggaaaacacggcggcgattcat
tgccaggtgccggttgaagtcaccgcgttcctgctcaacgaaaaacgtgcagaaatcaac
aaaatcgagtcgcgcttcaaggtcaatgtcgttctgatcccgaacaagcacctcgatacg
ccgcattacaaactcgagcgtctgcgtcacgatgacgcccgcctcgacgacccgcgtgct
tcctggaaaatggcggaagaagccgcccgcgaactcgaatccgaaaccggctacagcaag
cgcatcgaagaagttaagccgaagcaggaagccgtcgtgaaaggcattacgccagaaaag
cccgcaccaggcgcgccagttcgcccggcaccggttgctgcgcgcgctaccacgccagca
ggaggcggtttcatcggctggctcaagaatctgttcggaattccatccgaagcacctgca
ccagccactccggccacgactggcaaacccagccgcccggcgcgcgagcgcacggagcgc
ggcggcgagcgcggtcgcaaccgccgtggcactgggggacgtgaagcggcaggtcgcgcc
gaaggcacgccgtcaggcacacgccagggccaggcaactgcaccgcgccgtgaagaacgc
gagacgcgcgaaggccgtgaaccacgcgagggccgtgaaccgcgcgaaggccgtgaacca
cgcgaaggccgtgaaccgcgcgaaggccgtgaaccacgcgaaggccgtgaaccgcgcgaa
ggccgtgaaccacgcgaaggccgtgaaccacgcgagggccgcgagccacgcgagggccgt
gaaccacgcgagggccgcgagccacgcgctggccgtgaaccacgtgagaatcgcggcgaa
cgtggccaagatcgtaccgatgcaaacgaaaccgcaccgcgcggtgaacgccgggaacgt
ggtgagcgcggcgaacgcaatgatcgccgccgtcagccagaaacaaccgaagcgctgaac
gaagaaaattcgttgcagcaaacgcccgctgaaatggctgaaaacgccattctggccgat
caggaagcgattgcacgggacggtgacgagcgtcgtcgccgtcgccggggacgtcgtggt
ggacgtcgtgagcgtgacgaggaaggcggcgaacaaacggcgcatttcagcgacgccgaa
gacagcaccccgcgcgcccaggaactgcaaccgcagcaaagctatgaaaaagccagtcct
gctgcacctgaaccagccgttgaagtggcccgtgccagcgtgacgcaagctgcaccagcg
ccaacactgcagcaagtctcgaccgcaccagcaccggctcctttcgtacctgccgctgtc
gtaccagctcccgtcgtgcctgttgttgtcgaaacaagcgcagcgccagtgccgcagccc
atacctcaaccggtagtgactgaagtcgtcaaacctcagcctacggcattggtcatggtc
gaaacggttgctgcaccggtgcccgcaccggcaccgatcgcggttgaaacagcgtccgtg
gctcctgtcgcgcctgtgcaagtgcaaactaccgcaccagcgccagcaccagcgcccgtc
ccagtcgcagcggtagcatcacccgtgccccctccagctccggccgccgcacccgcatca
gccccggctggcttatcagcggaagcattgcaacccgtgctggaaagcgctggtctggtc
tgggtcaacacggatgccagcaagctgcgtgcagctcaggaagcctccgcgcaaatcgtc
aggccaagccgcgccccacgtgagcgcaagcgtgcagcacctgctgaaaacgcaccgatg
caacaggtcgaaaccggcaagaattcctag
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