Paraburkholderia bonniea: QS306_16310
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Entry
QS306_16310 CDS
T09664
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pbon
Paraburkholderia bonniea
Pathway
pbon03030
DNA replication
pbon03430
Mismatch repair
pbon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QS306_16310 (dnaE)
03430 Mismatch repair
QS306_16310 (dnaE)
03440 Homologous recombination
QS306_16310 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbon03032
]
QS306_16310 (dnaE)
03400 DNA repair and recombination proteins [BR:
pbon03400
]
QS306_16310 (dnaE)
Enzymes [BR:
pbon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QS306_16310 (dnaE)
DNA replication proteins [BR:
pbon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QS306_16310 (dnaE)
DNA repair and recombination proteins [BR:
pbon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QS306_16310 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
HROB
Motif
Other DBs
NCBI-ProteinID:
WJF91640
LinkDB
All DBs
Position
2:complement(643572..647144)
Genome browser
AA seq
1190 aa
AA seq
DB search
MAPMSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAQDGQGALALTDLSNAFGLVRFYKEA
RSKGVKPIAGCDVWITNHDDRDKPSRLLLLVRNQRGYLNLCELLSRASLTNQHRGRAEVD
AAWLADGMGEGLLALSGAQYGDIGVALSNGNEAAAKRHAQRWAEIFPGAFYLELQRSGQP
GGETYVQQAVALAAALKLPVVATHPLQFMIPDDFTAHEARVCISEGDMLANPRRPKRFTT
DQYFRTQAEMAALFADIPAALANTVEIARRCNLILELGKPRLPLFPTPDGMSLDDYLVQL
SQEGLEKRLEQLYPDAAARDAQRPVYSERLMFECGTIIDMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRVI
QYVKQKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIAD
AIKEEPLLQERFDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
DSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLAQVPLDDPA
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVKPVLQETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAE
HRALFRDGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYFTAWLKAHHPAEF
MAANLSLAMDDTDKVKILFEDCLMNGMSVLPPDINQSAYRFEPVAPAAGKARADTIRYGL
GAIKGSGQNAIEDIIRARDQDGPFIDLFDFCNRVDRRMVNRRTVEALIRAGAFDLLHDNR
AQLIASVSLAMEAAEQASANAMQAGLFDMGDAPSQGHELVLEPAWAEKQKLQEEKSALGF
YLSGHLFDAYRDEIRRFARQKIGELKEGRDKLVAGVIVSLRTQMTQRGKMLIAVLDDGTG
QCEVTVFNELFEAHKALFKEDELLVVQGQARNDMFTGGIRFTVETVMDLGCARSRYAEAL
KVQLGGDADAQVLRRLLQAHCVPRAQAGAPPPAAPSASRSARQGYGGDDHAGRRQAAAAA
PAGLAVWVMYCNQRAQAAVQLGEAWRVIPSDELLAALRAEYADNAVEIVY
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccatgtcagatccccgctttgtccatcttcgcgttcactccgaattttccatt
gctgacggcatcgtgcgccttgacgacatcgtcaaggcggcggcccaggacggtcagggc
gcgctcgcgctcaccgatctcagcaatgcctttggcctcgtccgtttctataaggaagcc
cgcagcaagggggttaaacccattgctggctgcgacgtctggatcaccaatcacgatgac
cgcgacaagccttcgcgcttgctactgctggtgcgcaaccagcgtggttatctcaacttg
tgtgagctgctcagccgcgcgtcactgaccaaccagcatcgcgggcgtgccgaagtagac
gccgcgtggctcgccgatggcatgggcgaagggctgctggcgttgtccggcgcgcagtac
ggcgatatcggcgtggcgctatccaatggcaacgaagccgcagccaaacgccatgcccag
cgctgggccgaaattttccccggtgcgttttatcttgagctgcaacgcagcggccagccc
ggtggcgagacttacgtgcaacaggcggtggcgctcgccgccgcgctcaagctgccggtg
gtagcgacccatccgctacagttcatgatccctgacgatttcaccgcgcacgaagcgcgc
gtgtgtatttcagagggtgacatgctggcgaacccgcgccgcccgaaacgtttcaccacc
gaccagtacttccgcacccaggccgaaatggccgcgctgttcgcggatattccagcggcg
ctcgccaatacggtcgaaatcgcccggcgctgcaatctgattctcgaacttggcaagccc
cggctgccgctcttcccgacgcccgacggcatgtcgctggacgactacctggtgcaactg
tcgcaagaagggctggaaaagcgtcttgagcagctttatcccgatgccgctgcacgcgat
gcacagcgtcccgtgtatagcgaacggctgatgttcgaatgcggcacgatcatcgacatg
gggtttccaggctacttcctgatcgttgccgacttcatcaactgggccaaaaacaacggt
gtgccggtgggcccaggacggggttcgggcgcaggttcgctggtggcgtatgcgctgggc
gtgacggatctcgacccactgcgctacaacttgctgttcgaacgtttcctgaaccctgag
cgggtgtcgatgcccgacttcgacatcgacttttgccaggaagggcgcgatcgcgtcatt
cagtatgtgaagcaaaaatacggtgccgatgcggtgtcacagatcgccacgttcggcacg
atggcagccaaggcggcggtgcgcgacattggccgcgtgctggatctgggttacatgttc
accgatggcattgccaagctgattccgttcaagcctggcaagcacgtgaccatcgccgac
gcgataaaagaagagccgctgttgcaggagcgcttcgataacgaagacgaagtgcgtcaa
ctgctggagctggcccagcgggtcgaagggctgacgcgtaacgtcggcatgcacgcgggc
ggggtgctgatcgcaccaggcaagctgaccgatttttgtccgctctacacccagggcgat
gacagcggcgtggtgagtcagtacgacaaggacgacgtcgaagccgttgggctggtcaag
ttcgactttttgggcctgaccacgctgaccattctcgattgggccgagcgctatattcgc
cgccttgatccgtcgaaacaggactggtcgctggcccaggtgccactggatgatcccgcg
tcattctcgattctgaaaaaagccaacacggtggcggtgttccagcttgaaagccgtggc
atgcaaggcatgctgaaggacgcgcagccggaccgcttcgaagacatcatcgcgctggtg
gcgctgtaccggccaggcccgatggacctgattcccagcttttgcgcgcgcaagcacggt
cgtgaagtggtggagtaccccgatccccgcgtcaaaccggttctgcaagagacctacggc
atcatggtctatcaggagcaggtgatgcagatggcgcagatcatcggcggttattcgctg
ggcggggctgacttgctgcgccgcgcgatgggcaagaaaaaggccgaggaaatggccgag
catcgcgcgttgttccgcgatggcgcagccaaaaatggcctcacggcagaaaaggccgac
gagattttcgacttgatggagaagttcgcgggctacggtttcaacaaatcgcacgctgcc
gcctatgcgctgctcgcgtatttcaccgcgtggctcaaggcgcatcatcccgccgaattt
atggctgccaacttgtcgctggcgatggacgacaccgacaaggtcaagattctgttcgaa
gactgcttgatgaacggcatgagcgtgctgccgccggatatcaaccagtcggcatatcgc
tttgagcctgtcgcaccggctgcaggcaaggcgcgggccgataccatccgctacggtctg
ggtgcgattaaaggcagcggtcagaacgccatcgaagacatcatccgggcccgcgatcaa
gacggtcccttcatcgacctgttcgatttttgcaaccgcgtggaccggcgcatggtgaac
cgccgcacggtcgaagccttgattcgcgctggtgcgtttgacctgttgcatgacaaccgg
gcgcagctcatcgcttcggtgtcgctggcgatggaagcggccgagcaggccagcgcgaac
gcgatgcaggccggcttgttcgacatgggcgacgcgccgtcgcaaggccacgagttggtg
cttgagccagcgtgggcagaaaagcaaaaactccaggaagaaaaaagcgcgctggggttt
tatctttcaggccatttgttcgatgcctaccgcgacgaaatccgccgctttgcccggcag
aaaattggcgaactgaaggaagggcgcgacaagctggtagcgggcgtcatcgtttcgctg
cgcacccagatgacccagcgcggcaagatgctgatcgcggtgctcgatgacggcaccggg
cagtgtgaagtgacggtgttcaacgagttgttcgaagcacacaaggcgcttttcaaagaa
gacgaactgctggtggtgcagggtcaggcgcgcaacgatatgtttaccggcggcattcgc
tttacggttgaaacggtgatggatctgggctgtgcgcgtagccgctatgccgaggctctg
aaagtgcaactgggcggcgacgctgatgcgcaagtgttgcgccgtttgctgcaggcacat
tgcgtgccgcgcgcacaagcgggcgcgccgccgccagcagccccttcagcctctcgtagt
gcccgtcagggctacggcggtgacgatcacgctgggcggcgtcaggcagctgccgccgcg
ccagccggtctcgcagtctgggtgatgtactgcaatcagcgagcccaggcggcagtgcaa
ctgggtgaggcatggcgcgtgattccaagcgacgaattgctggccgcgttgcgagccgaa
tacgcggacaacgcagtcgaaatcgtttattaa
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