Paraburkholderia bonniea: QS306_16325
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Entry
QS306_16325 CDS
T09664
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbon
Paraburkholderia bonniea
Pathway
pbon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QS306_16325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbon03019
]
QS306_16325
Enzymes [BR:
pbon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QS306_16325
Messenger RNA biogenesis [BR:
pbon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QS306_16325
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
RPC3_helical
Motif
Other DBs
NCBI-ProteinID:
WJF91643
LinkDB
All DBs
Position
2:complement(649430..650893)
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AA seq
487 aa
AA seq
DB search
MSDTAALPTSTITSFDQFGLADDILKAIHEQGYTVPTPIQAQAIPVVLAGRDMMGAAQTG
TGKTASFSLPILQRLLPHASTSTSPARHPVRALILTPTRELADQVAANVLAYGKHTALRS
TVVFGGVDMNPQMAELRSGVEILIATPGRLLDHVQQKTAQLGQVQILVLDEADRMLDMGF
LPDLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPLTIEVARSNSTSINVTQIVFE
VPEGDKSSAVVQLIRERGLKQVIVFCNSKIGAGRLARQLERDGVVATAIHGDRTQNERMQ
ALEAFKRGEIVALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGALGDAL
SLCSPNERKQLADIEKLIKRPLEVQRLTVATPVRHHHEERSGPRREREGREGRDERSGRR
RTPGTYERPHHPRQAPVDEFFLKPYEPSPNARPLDESVVAAPKPVSKQPLAALLGGLGMP
RKTDSSS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagccgcacttcccacgtccaccattacgtcgtttgaccagttcggtttg
gccgacgacatcctgaaagccattcacgagcagggctataccgtgccgacgccgattcag
gcccaggccatccccgtggtactggctggacgcgacatgatgggcgcggcgcaaaccggc
acgggcaaaaccgccagtttttcgctaccgatcctgcaacgcctgctgccgcacgccagc
accagcacttcaccggcgcgccaccccgtgcgtgcgctgattctcaccccaacccgtgaa
ctggctgaccaggttgccgccaatgtgctggcttatggcaagcacacggcgttgcgtagc
acggtggtgtttggtggggtggatatgaatccacaaatggctgaattgcgcagcggggtt
gaaatcctgattgccacgccgggccgcctgctcgatcacgtgcagcaaaaaaccgcgcaa
ctaggccaggtgcaaatcctggtgctggatgaagccgaccggatgctcgacatgggtttt
ctgcccgatttgcagcgcatcctgaatctgctgccaaaagaacgtcagacgttgctgttt
tccgccacgttctccggcgaaatcaaaaagctcgccgcaacctatctgcgcaaccctctg
actatcgaagtggcgcgcagcaattcgacctcgatcaacgtcacgcaaatcgtgtttgaa
gtgccggaaggtgacaagagcagtgcggtggtgcagttgatccgcgagcgcggcctgaag
caagtcatcgtgttctgtaatagcaagatcggcgcgggccgcctggcgcggcaactggaa
cgcgatggcgtggtggcgacggcgattcacggcgaccgcacgcaaaacgaacggatgcag
gcgctggaagccttcaaacgcggcgagatcgtcgcgctggtcgctacggatgtcgcggcg
cgcgggctggatattgccgaattgcccgcggtgattaatttcgatttgccatttagcgct
gaagattacgtgcaccggattggccgcacgggccgtgcgggagcactgggcgatgcgttg
tcgctgtgcagcccgaacgagcgcaagcaactggccgatatcgaaaaactcatcaagcgg
ccactggaagtgcagcgcttgacggtggccacgccagtgcgtcatcaccacgaagaacgc
agcggcccacggcgtgagcgtgaagggcgtgaaggacgcgatgagcgctcaggacgccgc
cgcacaccaggaacctacgagcggccgcatcacccgcgccaggctccggtcgacgaattt
ttcctcaagccttacgagccttcccccaatgcgcgtccgcttgacgagagcgtggtggcc
gcgcctaaaccggtttcgaaacagccattggctgcgttgctgggcgggctgggtatgccg
cgcaagacggattcttcgtcctga
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