Paludisphaera borealis: BSF38_01326
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Entry
BSF38_01326 CDS
T04622
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbor
Paludisphaera borealis
Pathway
pbor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSF38_01326 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbor03019
]
BSF38_01326 (cshA_1)
03009 Ribosome biogenesis [BR:
pbor03009
]
BSF38_01326 (cshA_1)
Enzymes [BR:
pbor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSF38_01326 (cshA_1)
Messenger RNA biogenesis [BR:
pbor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSF38_01326 (cshA_1)
Ribosome biogenesis [BR:
pbor03009
]
Prokaryotic type
rRNA helicases
BSF38_01326 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
APW59867
UniProt:
A0A1U7CLS4
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All DBs
Position
complement(1683721..1685457)
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AA seq
578 aa
AA seq
DB search
MAERGSKKAALPGFSSLGLDARLVEALTGLGYEEPSPIQREAIPPLLTGKDLVGQAATGT
GKTAAFALPLLHRLSLEDKKHAKPYALVLVPTRELAMQVAEAVHRYGRPIGAVVIPVYGG
QAYGPQIRALDRGADVVIATPGRALDLIKRKTLRLEGVQIVILDEADEMLDMGFAEDIES
ILSDTPKQRQTILFSATLPPRIAAIARKHLTDPLKIQIQPEPSAAGTVPLVRQTAYIVPR
GHKLATLGRVLDIENPTSAIVFCRRRNEVDELAETLNARGYRAEGLHGGMTQEQRNRVMK
KFRSETADLLIATDVAARGLDIQQLSHVINFDVPVEAESYVHRIGRVGRAGREGIAITLA
EPREHRQLRSIEHATGQKILIEKIPTVADLRARRLELTRASIRESIVAGDLERYRVVVES
LAGEFDVMDVAMGAVKLLHQANGSEDQDAEDIPDVEVQRDRPFRDSRGGGSRQAPARGPR
ERRPPGGEDRGQGDRGGGMMTRLFVGAGRAAGVRPQDLVGAITGEAGLTGRQVGDIDIAD
RFSLVEVPEDLAETVITALRNTRIKGRSVTVRRERAQD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcgaggatcgaagaaggcggcgcttccgggcttttcgtcgttgggcctggac
gcccggctcgtcgaggcgttgaccggactcggttacgaggagccgtcgccgatccagcgc
gaggcgattccaccgttgctcacgggcaaggacctcgtgggccaggccgccaccggcacc
ggcaagacggccgccttcgcgctgccgctccttcatcggctgtccttggaagacaagaag
cacgccaagccgtacgcgctggtgctggtccccacgcgcgaactggccatgcaggtggcc
gaagccgtccaccgctacggccggccgatcggcgcggtggtgatcccggtttacggcggc
caggcgtacggccctcagatccgggcccttgaccgcggcgccgacgtggtgatcgccacg
cccggtcgagccctcgacctcatcaagcggaagacgctccggcttgagggcgtgcagatc
gtgatcctcgacgaggccgacgagatgctcgacatgggcttcgccgaggacatcgagtcg
atcctctccgacacccccaagcagcggcagacgatcctcttctcggcgacgctgcccccc
cggatcgcggccatcgcccgcaagcacctcaccgacccgctcaagatccaaatccagccc
gagccgtccgccgcggggaccgtcccgctcgtccggcagaccgcctacatcgtcccccgg
ggacacaaactggcgaccctcggccgcgtcctcgacatcgagaacccgacctcggccatc
gtcttctgccgccgccgcaacgaggtcgacgagctggccgaaaccctcaacgccaggggc
tatcgagccgaggggctgcacggcggcatgacccaggagcagcgcaatcgggtcatgaag
aagttccggagcgagaccgccgacctcctgatcgccaccgacgtcgccgcccgagggctc
gacatccagcagttgtcgcacgtcatcaacttcgacgtcccggtcgaggccgagtcgtac
gtccaccggatcggccgggtcggccgcgcgggccgcgaggggatcgccatcaccctggcc
gagccccgcgagcaccggcagcttcggagcatcgagcacgcgaccggccagaagatcctc
atcgagaagatccccaccgtggccgacctccgggctcgccgcctcgaactgacccgcgct
tcgatccgcgagtcgatcgtcgccggcgacctggaacggtaccgggtcgtcgtcgagtcg
ctggccggcgagttcgacgtcatggacgtcgcgatgggggccgtcaagctcctgcaccag
gccaacgggtcggaggatcaggacgccgaggacatcccggacgtcgaagttcagcgcgac
cggccgttccgcgactctcggggaggcggaagccgccaggccccagcccgaggtccgcgt
gagcgtcgcccccctggcggcgaggatcgcggccagggcgatcgtggcggcggcatgatg
acccgcctgttcgtcggcgccggccgggccgccggcgtccgtccgcaagaccttgtcggc
gcgatcaccggcgaggcgggcctcaccggccggcaagtcggcgacatcgacatcgccgac
cgcttctcgctcgtcgaagtccccgaagaccttgccgaaaccgtcatcaccgccctccgc
aacacccggatcaagggccgcagcgtgaccgtccgccgcgaacgcgcgcaggactga
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