Paludisphaera borealis: BSF38_01417
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Entry
BSF38_01417 CDS
T04622
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbor
Paludisphaera borealis
Pathway
pbor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSF38_01417 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbor03400
]
BSF38_01417 (mfd)
Enzymes [BR:
pbor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSF38_01417 (mfd)
DNA repair and recombination proteins [BR:
pbor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSF38_01417 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APW59956
UniProt:
A0A1U7CM17
LinkDB
All DBs
Position
complement(1800532..1803804)
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AA seq
1090 aa
AA seq
DB search
MPRLSPRRSAATPPAASELKDLTRSIQTASGFPEVIAALKNGQAATIDGAWGSASGLVSA
ALALHAPTTLIIVLAHVGDVDDYRDDVAVFSGITPEVLPAWDKLPREQDATDEVFGNRLR
VVGRLAGGLPPRVVVTSMQALLQPVPRPDVLRRMSRRLEVGDAVAIDELGSWLMERGMVR
AEVVEIPGEFSLRGGIFDVFPTDSTDPVRVEFFGDEIESIRPFDPGSQRSLDRWQSVTIT
VPPSFNDANLDSFGPATDAFPEGTWIALLEPADLREEGRHYLARVEDPRGLYSVESTFER
LVRRPTIALSVLAADSLEATCHLRIESVERFSGELTKVKDELETAAAGDRVLIACHNAAE
VERLGEVFADTELARAGRLDRCVGRIRAGFHMVDASTLVIADHELFARADVRRTTSRRRY
ESRAIDSFLDLNEGDLVVHVNHGIARYLGLQFVDKSDEHAEETLLLEFAEKTKLYVPIAK
IDLVQKYIGGGKATPPLSKIGSSAWDKRKKRVEEAVVDLAQELLDIHAQRASQPGFAYPA
EDSHWMAEFEAAFPFDETPDQLAAIEAVKEDMAVTKPMDRLICGDVGYGKTEIAIRAAFK
AVDAGKQVGVLVPTTILAEQHHRSFSARMGEFPFVVEVVNRFRPKSEIKDVLKRTAAGGV
DILIGTHRILQKDVGFKDLGLIVVDEEQRFGVEDKEWLKTLRSTVDVLTLSATPIPRTLH
MSLLGIRDISNLETPPADRKAIETRILRFDPDTIKRAIHRELNRDGQVYFVHNRIHDIQN
IVDKIQAIVPEARICIGHGQMTGEALERTMLAFIRRDFDVLVATTIIESGLDIPNVNTIF
INEADKYGLADLHQLRGRVGRFKHRAYAYLLLESDRPVTPNAVKRLKAIEEFTSLGAGFK
IALRDLEIRGAGNILGAEQSGHIESVGYELYCSLLESAVRSATKQPNKPLFDCSVELKWK
AYLPRDYVPGARVKLELYRRLARLRTLDHLSDFRQELNDRFGPPPRPAENLLAEAELRIL
AGNWKLDRIHVEGEYVVFTYRDTRRIETLARRNKGRVRVVDAKKAYVPLGEDPLKTPQIV
AVVKSLLSTK
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgcccaggctctcgccaagacggtccgccgcgacgcccccggcggcgagcgagctgaaa
gacctgacccgctcgatccaaacggcctcgggcttccccgaggtgatcgcggccctcaag
aacggccaggccgcgacgatcgacggcgcctgggggtcggcctccgggctcgtctcggcc
gcgctcgcgttgcacgcgccgacgacgctgatcatcgtgctcgcccacgtcggcgacgtc
gacgactaccgcgacgacgtcgccgttttctcggggatcacgcccgaagtcctccccgcc
tgggacaagctgccccgcgaacaagacgccaccgacgaggtcttcggcaaccgcctccgc
gtcgtcggccggctggccggcgggttgccgccgcgcgtggtggtcacgtcgatgcaagcg
ttgcttcagccggttcccaggcccgacgtgctgcggcggatgtcgcgccggctcgaagtc
ggcgacgccgtcgcgatcgacgagctgggctcgtggctcatggagcgcgggatggtccgg
gccgaggtcgtcgagatcccgggcgagttcagcctccgcggcggcatcttcgacgtcttt
ccgacggattccaccgacccggtccgcgtcgagttcttcggcgacgagatcgagtcgatc
cgccccttcgaccccggctcccagcgctcgctcgatcgctggcagtcggtgacgatcacc
gtcccgcccagcttcaacgacgccaatcttgacagcttcggccccgccaccgacgccttt
cccgaggggacctggatcgcgctcctggagcccgccgaccttcgcgaggaaggacggcac
tacctggcgcgagtcgaagacccgcgcgggctctactcggtcgagagcacgttcgagcgg
ctggtacgacggccgacgatcgccctgtcggtcctcgccgccgactcgctcgaagcgacc
tgccacctgcggatcgagagcgtcgagcggttctcgggcgagctgacgaaggtcaaggac
gaactcgaaacggcggcggccggcgaccgggtcttgatcgcctgccacaacgcggcggaa
gtcgagcggctcggcgaagtcttcgccgacaccgagctggcgcgggccggccggctcgat
cgctgcgtcggccgcatccgggccggcttccacatggtcgacgcgtccacgctggtgatc
gccgaccacgagctgttcgcccgcgccgacgtccgccgcacgaccagccgacggcggtat
gagagccgggcgatcgacagctttctcgacctgaacgaaggcgatctcgtcgttcatgtc
aaccacgggatcgcccgttacctgggcctccagttcgtcgacaagtcggacgagcacgcc
gaggagaccttgctcctcgaattcgccgagaagaccaagctctacgtcccgatcgccaag
atcgatctggtccagaaatacatcggcggcggcaaggcgacgccgccgctctcgaaaatc
ggctcgtcggcgtgggacaagcgcaagaagcgcgtcgaagaggccgtagtcgacctggcg
caagagctactcgacatccacgcccagcgcgcgagccagccgggcttcgcgtatcccgcc
gaggacagccactggatggccgagttcgaggcggcctttccgttcgacgagacgcccgac
cagctcgcggcgatcgaggccgtcaaggaagacatggccgtgaccaagccgatggaccgc
ctgatctgcggcgacgtcggctacggcaagaccgagatcgccatccgcgcggcgttcaag
gccgtcgacgccggcaagcaggtcggcgtgctcgtgccgacgacgatcctcgccgagcag
caccaccgcagcttcagcgcgcggatgggcgagttcccgttcgtcgtcgaggtcgtcaat
cggttccggccgaaatccgagatcaaagatgtcctcaagcgcacggcggccggcggcgtc
gacatcctgatcggaacccatcgcatcctccagaaggacgtcggcttcaaggacctgggc
ctgatcgtcgtcgacgaggagcagcggttcggcgtcgaggacaaggaatggctcaagacg
ctgcgatcgaccgtcgacgtcctgacgctctcggccacgccgatcccgcgcacgctgcac
atgagcctgctgggcatccgcgacatctcgaatctcgaaacgcccccagccgaccgcaag
gcgatcgagacccggattctccggttcgaccccgacaccatcaagcgcgcgatccatcgc
gagctgaaccgcgacggccaggtgtatttcgtccacaaccggatccacgacatccagaac
atcgtcgacaagatccaggccatcgtgcccgaagcgcggatctgcataggccacggccag
atgaccggcgaggcgctcgagcggacgatgctcgcgttcatccgccgcgatttcgacgtc
ctggtcgccaccacgatcatcgagagcgggctcgacatccccaacgtcaacacgatcttc
atcaacgaggccgacaagtacggcctggccgacctccaccagcttcgcggacgggtggga
cgcttcaaacaccgtgcttatgcctacctgttgctcgaatccgaccgacccgtcacgccc
aacgccgtcaaacggctcaaggcgatcgaggaattcacgtcgctcggcgcggggttcaag
atcgcgctccgcgatctggagatccggggcgcggggaacatcctgggcgccgagcaatcg
ggccacatcgagagcgtcggctatgagctgtattgctcactgctggaatcggccgtgcgg
tcggcgacgaagcagccgaacaagccgctgttcgactgctcggtcgagctgaaatggaag
gcctacctgccgcgcgactacgtccccggcgcgcgggtgaagctggaactctatcgccgc
ctggcccggctccgaaccctcgatcacctgtccgacttccgccaggagctgaacgaccgt
ttcgggccgccgccgcgaccggccgagaacctgctcgccgaagccgagctgcgcatcctc
gccggcaactggaagctcgaccgaatccacgtcgagggcgagtacgtcgtcttcacctac
cgcgacacccgccgcatcgagaccctcgcccgccgcaataaagggcgggtccgggtcgtc
gacgccaagaaagcctacgtcccactcggcgaagacccgctgaagactccccagatcgtc
gccgtcgtcaagtcactgcttagcacgaagtag
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