KEGG   Paludisphaera borealis: BSF38_02422
Entry
BSF38_02422       CDS       T04622                                 
Symbol
yfmL
Name
(GenBank) putative ATP-dependent RNA helicase YfmL
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pbor  Paludisphaera borealis
Brite
KEGG Orthology (KO) [BR:pbor00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbor03400]
    BSF38_02422 (yfmL)
Enzymes [BR:pbor01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BSF38_02422 (yfmL)
    5.6.2.6  RNA 3'-5' helicase
     BSF38_02422 (yfmL)
DNA repair and recombination proteins [BR:pbor03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BSF38_02422 (yfmL)
SSDB
Motif
Pfam: DEAD_assoc DEAD WH_Lhr Helicase_C ResIII DUF6466
Other DBs
NCBI-ProteinID: APW60928
UniProt: A0A1U7CPU3
LinkDB
Position
3121914..3124556
AA seq 880 aa
MPTIDPTAESGNALGLLSSPVRRWFSSAFPSGPTPAQAAAWPLIAEGEHVLLVSPTGTGK
TLAGFLAIVDRLLRDHAAGELKPGPRCVYISPLRSLGYDIERNLAIPLAGLQAALGLAES
PVQVGVRTGDTSAYDRRKLRDHPPHILITTPESLSLLLSQASWRDRWRGVEHIIVDEVHA
LVPTKRGSDLAVSLERLVDASAHAPQRIGLSATCRPPDPVARFLVGPSRSCRVVEVPRPA
DSPKLELEVDSLLRPGEGPHRGLTYRRLLKRLRRAIDAHRTTVVFANTRPMTERITHDLR
HQSPGRDQRGEEPCYDRETAIAAHHSALDAGRRREVEAMLKAGQLRAVVTSTSLELGVDI
GTADLAVQIGLPGGVARCLQRIGRSGHRVGAAPRGVIVAATASEVAGAAVTARAGRAGAI
EPLAMIESPLDVVCQQLLGMACAEETFVESAFALFRKAGPTANLDRDDFQSCLDFLAGDL
ASPAGAFEPEPGANPRWTSPRIWKHDGWFGVRSRRVQRWLWTNIGTITSEESVSVVADGK
ALGTIEGQYAERLSAGDRFVLDGRTLEFRRLDGLMLHARVVGGEAGALPVWHSDRQALSS
ELAAELAEFRAEASRKSVGEGPEAVRDWLAEALELKPGVAAVVAELIEAQDRYSETPDVN
ALLVEEFPSEHEPGLTYAFHAPLNRAACEALGRAFAARLGRRFGRDLALQAADLGWSIRL
PEDARIGDEDLEALTAMDGLADDVLEGVDRGDLAARRFRHVAATALMVLRNPERGKRVRV
GGLLWVSSRLYPLVKAACPNHPLLRETRREVLRDILDVDAAARWLATKPTLRLRRLSAPS
PFTLAWIAPGADEPLHFDTPADALRRLHARMTASATGDTP
NT seq 2643 nt   +upstreamnt  +downstreamnt
atgcccacgatcgacccgacggctgaatccgggaacgcgctggggctcttgtcgagtccg
gtccggcgatggttctcatcggcctttccaagcgggccgacccccgcgcaggcggcggcc
tggccgctcatcgccgagggggagcacgtcctcctcgtctcgccgaccgggaccggcaag
acgctcgcgggattcctggcgatcgtcgaccggctcttgcgcgatcatgcggcgggcgag
ctgaaacccggaccgcgatgcgtttacatctcaccgctgcggagcctcggctacgacatc
gagcgcaacctggcgatcccgctcgccggacttcaggcggcgctgggcctggccgaaagc
cccgtgcaggtgggagttcggacgggggacacgtcggcctacgaccgccgcaagctccgc
gatcatccgccgcacatcctgatcaccacgcccgagagcctgtcgctcctgttgagccag
gcgagttggcgcgaccgctggcgaggggtcgagcacatcatcgtggacgaggttcacgcg
ctggttcccaccaagcgaggcagcgacctggccgtctcacttgaacgcctggtcgacgcc
tcggcccacgccccccagcgcatcgggctgtcggcgacctgccgtccccccgaccccgtg
gcccggttcctggtcgggccgtcgcgatcgtgtcgcgtggtggaagttccccgccccgcc
gattcgccgaagttggagctggaagtcgattcgctgctccgtcccggcgagggtccgcat
cgcggactgacatatcgccgcttgctcaagcgattgcgccgcgcgatcgacgctcatcgc
acgacggtcgtgttcgccaacacccggccgatgaccgagcggatcacccacgacctccgc
catcagtctcccggccgcgaccagcgcggcgaggaaccgtgttacgaccgcgaaacggcc
atcgccgcgcaccactcggccctcgacgccggccgacgccgcgaggtcgaggcgatgctc
aaggcgggccagctccgggccgtggtgacgagcacgagtcttgaactcggcgtcgacatc
gggacggccgacctggcggtccagatcgggctgcccggcggcgtcgcccgctgcttgcag
cggatcggccgatcgggacaccgcgtcggtgctgcgccgcgcggcgtgatcgtggcggcc
accgcatcggaagtcgccggcgcggccgtcaccgcacgggccgggcgcgccggagcgatc
gagcccctcgcgatgatcgaatcgccgctcgacgtcgtctgccagcagctgctcgggatg
gcctgcgcggaagagacgttcgtcgagtcggccttcgcgctgttccgcaaggccgggccg
acggcgaatctcgaccgtgacgacttccagtcttgcctcgacttcctggccggcgacctt
gcgagccccgccggcgcgttcgagcccgagcccggcgcgaacccgcgctggacgtcgcct
cgcatctggaagcacgacggctggttcggcgtccgcagccggcgcgtccagcgctggtta
tggacgaacatcggcaccatcacatcggaggagtccgtatcggtcgtggccgacggcaag
gcgctggggacgatcgaaggccagtacgccgagcggctgtcggctggcgaccgcttcgtg
ctcgacggccggacgctcgaattccgacggctcgacggcctgatgctccacgcccgcgtc
gtcggcggcgaggccggggcgctccccgtctggcacagcgaccgccaggcgctgtcgtcg
gagctggccgccgagctggccgagttccgggccgaagcctctcgaaagtcggtgggcgaa
ggccccgaggcggttcgcgactggctggccgaggccctcgaactcaagcccggcgttgcg
gcggtcgtcgctgagttgatcgaggcccaggaccgctacagcgagacgcccgacgtgaac
gccctgctcgtcgaggagttcccctcggagcacgagcccggcctgacctacgcgttccac
gcgccgctcaaccgcgccgcgtgcgaggccctgggccgggcgttcgcggcccgcctggga
cgccggttcggccgcgacctcgcgcttcaggccgccgatctcggctggtcgatccgattg
ccggaggacgcgcggatcggtgacgaggacctcgaagcgttgacggcgatggacggcctg
gccgacgacgtgctcgaaggggtcgaccggggcgatctcgcggcccgtcggttccgccac
gtcgcggccacggcgctgatggtcttgcgcaatcccgagcggggcaagcgcgtgcgggtc
ggcgggctgctctgggtcagctcgcgactctatccgctggtgaaggccgcctgcccgaac
catcccttgctccgcgagacgaggcgcgaggtgctccgcgacatcctcgacgtcgacgcc
gccgcgcgctggctggcgacgaagccgacgctccggctgcgtcgactctcggcgccgtcg
ccgttcaccctggcctggatcgcccccggggccgacgagccgctccacttcgataccccg
gccgacgcgctgcggcggctccacgcgcgaatgacggcctcggccacgggagacacgccg
tga

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