Paludisphaera borealis: BSF38_02489
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Entry
BSF38_02489 CDS
T04622
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pbor
Paludisphaera borealis
Pathway
pbor03030
DNA replication
pbor03430
Mismatch repair
pbor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSF38_02489 (dnaE)
03430 Mismatch repair
BSF38_02489 (dnaE)
03440 Homologous recombination
BSF38_02489 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbor03032
]
BSF38_02489 (dnaE)
03400 DNA repair and recombination proteins [BR:
pbor03400
]
BSF38_02489 (dnaE)
Enzymes [BR:
pbor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BSF38_02489 (dnaE)
DNA replication proteins [BR:
pbor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BSF38_02489 (dnaE)
DNA repair and recombination proteins [BR:
pbor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BSF38_02489 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
HHH_3
Tmemb_14
PHP_C
DUF655
Motif
Other DBs
NCBI-ProteinID:
APW60991
UniProt:
A0A1U7CPZ6
LinkDB
All DBs
Position
complement(3202921..3206580)
Genome browser
AA seq
1219 aa
AA seq
DB search
MASRPFVHLHCHSHYSLLDGQNKLPDLVKQVKALGMPAIAVTDHGNMFGAMEFLREAKYA
GIKPIVGIEAYVAPGKRTDRSTNGSGDEKFAYHLTLLAKNGVGFRNLLRLTSRSYQEGYY
YKPRMDKELLARHSEGLICLSGCVGSEFSQHLLHDRTAAAEKLAIWYQQTFGEDNFFVEI
QNNGLQIQRDAMERQVDLANRLGMPLVATSDAHYLRQDDHLAHDALLCINTGKTVDQPLD
KPRFVADDGRLSDQFHVRSPDEMYAVVGGHEEALAQSARIAESVEENYTSLNLGKRLFPS
FKPPEEKTAEDYLRELCEQGLIARYGASPPAEARERLDHELGTINRMGFASYFLIVWDFV
RYAREKSIPALARGSACGALVSYVLYLSNVCPLKYDLLFERFLDPNRSEAPDIDIDLCQE
RRYEVIEYVRQKYGQANVAQIGTFGTMKAKAAIKDVGRVLNLPLARVEEINKLIPTRLNI
TLEEALKEEPALRKMVEQDPDIERLMTLARRLEGSVRNASTHAAGVVIADQPLESLVPLQ
VIRRGDKEEVVCTQWDMGDVEKAGLLKMDFLGLRNLTTLEAAVRLINARNPDAPIDIDNL
PLNDPKAFELLQRGETKGVFQLESAGIRDLLVKMKPDRFADIIATNALYRPGPLNGGMVD
EYVDVKNNRKQATYLHPVLRDVLEETYGVMVYQEQVMRILNRLGGIELSKAYACIKAISK
KKTETIAEGRDQFIKGSIEKGLERDQASRIFALIEFFGGYGFNKSHSTAYALVAYQTAYL
KSHYPTEYMAAVLSSEMNGAERDKFFVEHIDDCRRMGIEVQRPDVNRGSTTFTVVTEGKV
EFGLEAVKGVGTKAVEAILRAREEGGPYRSLDEFFERVSTREVSAAAAETLIRAGAFDGF
GARRSQLLAVLPRAMQAGQAKQEDRRRGQRGLFDEPETPAHGAHNGNGNGVAPGVANLPD
VPELPDVDLLSGEKKALGFYMSNHPLTRYAATLQALSTHRTTDLASAPDKCEVLLGGMIT
NVQVRNVQKSRSGLTRMAKLTFEDLDGSTPAMLWPEEFAKLGDLIVNDAIGFVKGTIDRR
RDPPELVISKIIPIESASSELARGVVVRLHKGLQQDAELERLLRIVRVHPGGLDLYLEIF
GIENVRRVIYRAGASLRIRCDEKMVAEMEQVVGSGNVRLLGQRGATARAESSAKPAVAVR
VAVPEPMDDLDPTDDLDDD
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcgcccgttcgttcacttgcattgccacagccattacagcttgctcgacggc
cagaacaagctgccggacctggtcaagcaggtcaaggcgctggggatgccggcgatcgcg
gtgacggaccacggcaacatgttcggggcgatggagtttctccgggaggccaagtacgcc
ggcatcaagccgatcgtggggatcgaggcgtacgtcgcacccggtaagcggactgaccgc
tcgacgaacgggtcgggggatgagaagttcgcgtatcacctgacgctcctggccaagaac
ggcgtcgggttcaggaacctcctacggctcacctcgcggtcgtaccaggagggctactac
tacaagccgagaatggacaaggagctgctcgcacggcacagcgaggggttgatatgcctg
tcgggctgcgtcgggtccgagttctcgcagcacttgctgcacgaccgcacggcggcggct
gagaagttggcgatctggtatcagcagaccttcggcgaggacaacttcttcgtcgagatc
cagaacaacggcctgcaaatccagcgcgatgcgatggagcggcaggtcgacctggctaac
cggctggggatgccgctggtggcgaccagtgacgcccactacctgaggcaggacgaccac
cttgcgcacgacgccctgctgtgcatcaatacgggcaagaccgtcgaccagccgctcgac
aagccccggttcgtcgccgacgacggccggctgtccgaccagttccacgtccgcagtccc
gacgagatgtacgcggtcgtcggcggccacgaggaggcccttgcgcagtcggcccggatc
gccgagagcgtcgaggagaactacaccagcctgaacctgggcaagcggctgttcccgtcg
ttcaagccgccggaggagaagacggccgaggactacctgcgcgagctttgcgagcaaggt
ttaatcgctcggtacggcgcgtcgccccccgccgaggcccgcgagcgacttgatcacgag
ctgggtaccatcaaccgcatggggttcgcgtcgtacttcctgatcgtctgggatttcgtc
cgctacgctcgcgagaagagcatcccggccctggctcgtggatcggcctgcggtgcgctc
gtcagttacgtgctctacctcagcaacgtctgcccgctcaagtacgacctgctgttcgag
cggttcctcgacccgaaccggtcagaggcgcccgacatcgacatcgacctctgccaagag
cgtcggtacgaggtcatcgagtacgtccgccagaagtacggccaagccaacgtcgcgcag
atcggcacgttcggaaccatgaaggccaaggcggcgatcaaggacgtcggccgggtgctc
aacctccccctcgcacgggtcgaggagatcaacaagctgatccccacccggctgaacatc
acgctcgaagaggccctcaaggaagagccggcgctgcggaagatggtcgagcaagatccg
gacatcgagcgactgatgacgttggcccgccggctggaaggctcggtccgcaacgcgagc
acgcacgcggccggcgtggtgatcgccgaccagccgctggaatcgctggtccccttgcag
gtgatccgccgcggcgacaaggaagaggtcgtctgcacccagtgggacatgggcgacgtc
gagaaggccgggctcctgaaaatggacttcctcggcctccgcaacctgacgacgctggag
gccgccgtccgcctcatcaacgcccggaacccggacgccccgatcgacatcgacaacctg
ccgctcaacgaccccaaggcgttcgagctgctccagcgcggcgagaccaagggcgttttc
cagcttgagagcgcgggcatccgcgaccttctggtgaagatgaagcccgaccgattcgcc
gacatcatcgccaccaacgcgctctaccggccgggcccgctcaacggcggcatggtcgac
gaatacgtggatgtgaagaacaaccgcaagcaggcgacctacttgcatccggtgctccgc
gacgtcctggaagagacctacggcgtcatggtctaccaggaacaggtcatgcggatcctc
aaccgcctgggaggcatcgaactctccaaagcgtacgcgtgcatcaaggcgatctcgaag
aagaagaccgagacgatcgccgaaggccgcgaccagttcatcaagggctcgatcgagaag
ggcctggaacgcgaccaggcgtcgcggatcttcgcgctcatcgagttcttcggcggctac
ggcttcaacaagtcgcacagtacggcctacgcgctggtggcctaccagacggcctacctg
aagtcgcactacccaaccgagtacatggcggccgtcctgtcgtcggagatgaacggagcg
gagcgcgacaagttcttcgtcgaacacatcgacgactgccggcgcatgggcatcgaggtg
cagcggcccgacgtcaaccgcgggagcacgacgttcacggtcgtgaccgagggcaaggtg
gagttcgggctcgaagccgtgaaaggggtcggcaccaaggcggtcgaggcgatccttcgg
gctcgcgaggagggggggccgtatcgaagcctcgacgagtttttcgagcgggtgtcgacg
cgtgaggtgagcgccgccgccgccgagactttgattcgcgccggggcgttcgacggcttc
ggcgctcgaaggtcgcagcttctggccgtcctcccccgcgccatgcaggccggacaggcc
aagcaggaggaccgccgccgcggccagcgcggactgttcgacgagcccgaaactccggcg
cacggcgcgcacaatggaaacggcaacggcgtcgcgcccggcgtcgccaacctgccagac
gtccccgaactccccgacgtcgatttgctcagcggcgagaagaaggcgctgggtttttat
atgtcgaaccaccctttgacccgctacgcggcgacgcttcaggcgttgtcgacgcaccgg
acgacggacctggcctcggccccggacaaatgcgaggtgctcctcggcggcatgatcacg
aacgtccaggtgcggaacgtccagaagagccggtcgggcctgacgcgaatggccaagctg
accttcgaggacctggacggcagcacgccggcgatgctctggcccgaggagttcgccaag
ctcggcgacctgatcgtgaacgacgcgatcgggttcgtgaaggggacgatcgaccgccgc
cgcgatccccccgagctggtgatcagcaagatcatcccgatcgaatcggcgtcgtccgag
ctggcgcgcggggtcgtcgtgcggctgcacaagggacttcagcaggacgccgagctggag
cgtctgctgcggatcgtccgggtccatcccggcggcctggacctctatcttgagattttc
gggatcgagaacgtccgccgcgtgatctaccgcgcgggggcctcgctgcgcatccgctgc
gacgagaagatggtcgccgagatggagcaggtcgtcggttcgggcaacgtccgcctgctc
ggccagcgcggggcgacggcgcgggccgagtcgtcggccaagccggcggtcgcggtgcgc
gtcgcggtccccgagccgatggacgacctcgaccccaccgacgacctcgacgacgattga
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integrated database retrieval system
