Paludisphaera borealis: BSF38_02524
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Entry
BSF38_02524 CDS
T04622
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pbor
Paludisphaera borealis
Pathway
pbor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSF38_02524 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbor03019
]
BSF38_02524 (rnr)
03016 Transfer RNA biogenesis [BR:
pbor03016
]
BSF38_02524 (rnr)
Enzymes [BR:
pbor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BSF38_02524 (rnr)
Messenger RNA biogenesis [BR:
pbor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSF38_02524 (rnr)
Transfer RNA biogenesis [BR:
pbor03016
]
Prokaryotic type
tRNA degradation factors
BSF38_02524 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
OB_HELZ2
S1CSD-TOTE-2
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
APW61021
UniProt:
A0A1U7CQ23
LinkDB
All DBs
Position
3246929..3249232
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AA seq
767 aa
AA seq
DB search
MSSFADRVLKLVAEPSYKPRTIKALSRWFKIDPDDYAAFRAEVKGLVKEGKLDVARDKTL
TRVDTAGTIIGLFRRSSKGFGFVRPHGVNAKADQIYIAPESAGDASSGDEVAVKILKKAR
RDGMNDEGKIVQIVARATSGFVGTYYEEGESSYVKVDGTTFHGPIYVGDPGAKGAKPGDK
VAIEIVRYPTPYQEGEGVVSEILGVRGAPGVDTLTVIRAFNIPDVFDDSVLDEARQQAKH
FHEDDVAGRLDHRGVLTVTIDPATARDFDDAISLERDEKGFWTLGVHIADVSHFVEPNSE
LDHVARKRGTSVYLPDRVVPMLPEIISNSLASLQAGHTRYTVSAFLEFNDDGVLTSKRFA
RSAIRVDHRFAYEQAFEVMKNPEGEHEGVAPEVVNMVVNMLSLAMTLRRRRFTRGALELS
LPEVEIKLDDQGKVAGAHLASHDESHQVIEEFMLAANEAVASYLSEQHVGFLRRVHPDPE
EHKLAEFAEFVRSLGIPLDLPQSRFELQKVLDETKGKPEEYAVHYGLLRSLKQAVYSPEP
ETHYALASDDYCHFTSPIRRYPDLQVHRQLTTLLAGKKPRSNMDELAVLAESCNRTERRA
EAAERELVRVKMLMYMESKIGESFHAIVVGVEDFGLFCRLVELPVEGLIHVTSLADDFYY
LEAGTHTLVGRRSGVRHRLGDRIEIRVAHVDVDRRQLDLVLATTPLSKTRTPARKHYYES
TPASRSPKPPRAEAEANASPRPRRPGVNNKKKAKPKGTKKPKRRRPS
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcttcgctgatcgcgtgctcaaactggtggccgaaccgtcgtacaagcctcgg
acgatcaaggcgctctcgcggtggttcaagatcgatcccgacgactacgccgcgttccgg
gccgaggtcaagggcctcgtgaaggaaggcaagctggatgtggcccgcgataagacgttg
acccgggtcgacacggccggcacgatcatcggcctgttccggcggtcgtcgaaggggttc
ggcttcgtccgcccgcacggcgtcaacgccaaggccgaccagatctacatcgcgcctgag
tcggccggcgacgcctccagcggcgacgaggtggcggtcaagatcctcaagaaggcgcgc
cgcgacgggatgaacgacgagggcaagatcgtccagatcgtcgcgcgggccaccagcggc
ttcgtggggacctactacgaggaaggcgagtcgagctacgtcaaggtcgacggcaccacg
ttccacggcccgatctacgtcggcgaccccggggccaagggggcgaagcccggcgacaag
gtcgcgatcgagatcgtccgctacccgaccccgtaccaggaaggggagggggtcgtctcc
gagatcctcggcgtgcgcggagcgcccggagtcgacacccttacggtgatccgggcgttc
aacatccccgacgtcttcgatgactcggtgctcgacgaggcccgccagcaggccaagcat
ttccacgaggacgacgtcgccggccggctcgaccatcgcggcgtcttgaccgtgaccatc
gacccggccacggcccgcgacttcgacgacgccatctcgctcgaacgcgacgagaagggg
ttctggaccctgggcgtccacatcgccgacgtctcgcacttcgtcgaaccgaattcggaa
ctcgaccacgtcgcgcggaagcgaggcaccagcgtctacctgcccgaccgcgtcgtcccg
atgctgccggagatcatctccaacagcctcgccagccttcaggccggtcatacgcggtac
accgtgagcgcgttcctggagttcaacgacgacggcgtgctgacctcgaaacggttcgcc
cggtcggcgatccgggtcgaccaccggttcgcctatgagcaagcgttcgaggtgatgaag
aaccccgagggcgaacacgaaggggtcgcgcccgaggtcgtgaacatggtcgtgaacatg
ctgtcgctggcgatgacgctgcgccgccgccggttcacgcgaggggcgctcgagctgagc
ctgcccgaagtcgagatcaagctcgacgaccaggggaaggtcgccggcgcccacctggca
agccacgacgaaagccaccaggtgatcgaggagttcatgctggcggccaacgaggccgtg
gcgtcttacctgagcgagcagcacgtcggcttcctccgtcgcgtgcatcccgatcccgag
gagcacaagctcgccgaattcgccgagttcgtccgcagcctgggcatcccgctcgacctc
ccgcagagccggttcgagctgcaaaaggtgctcgacgagaccaaggggaagcccgaggaa
tacgcggtccactacggcctgttgcgcagcctcaagcaggccgtctactcgcccgagccc
gaaacccactacgctctggccagcgacgactactgccacttcacgtctccgatccgccgc
tatcccgacctgcaggtccatcgccaactgaccacgctgctggcgggcaagaagccgcgc
agcaacatggacgagctggcggtcctggccgagagttgcaaccgaaccgagcggcgggcc
gaggcggccgagcgcgagctggtgcgtgtgaagatgctcatgtatatggaatcgaagatc
ggcgaatcgttccacgcgatcgtggtcggcgtcgaggatttcggcctgttctgccgactc
gtcgagctgcctgtcgagggcctgatccacgtcaccagcctggccgacgacttctactac
ctcgaagccggcacgcacacactcgtcggccgacgctcaggagtccggcatcggctgggc
gatcgcatcgagatccgcgtcgcgcacgtcgacgtcgaccgccgccaactcgatctggtg
ctcgccaccacgcccctgagcaagacgcgcacgccggcccgcaagcactactacgagtcg
acccccgcctcgcgatcgccaaagccgccccgtgccgaggccgaggcgaacgcctcgccg
cgcccccgccggcccggcgtcaacaacaagaagaaagccaagcccaagggaaccaagaag
cccaagcggcggagaccctcgtag
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